Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PIF1Q9H611 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PIF1Q9H611 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PIF1Q9H611 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
PIF1Q9H611 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
PIF1Q9H611 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
PIF1Q9H611 AC011477.6-201ENST00000604980 1927 ntBASIC15.21■□□□□ 0.03
PIF1Q9H611 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
PIF1Q9H611 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.21■□□□□ 0.03
PIF1Q9H611 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 HLA-A-201ENST00000376802 1334 ntBASIC15.21■□□□□ 0.03
PIF1Q9H611 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.21■□□□□ 0.03
PIF1Q9H611 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.21■□□□□ 0.03
PIF1Q9H611 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.21■□□□□ 0.03
PIF1Q9H611 AC009078.2-202ENST00000463353 338 ntBASIC15.21■□□□□ 0.03
PIF1Q9H611 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.21■□□□□ 0.03
PIF1Q9H611 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.21■□□□□ 0.03
PIF1Q9H611 AC112693.3-201ENST00000624819 1983 ntBASIC15.21■□□□□ 0.03
PIF1Q9H611 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PIF1Q9H611 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.21■□□□□ 0.03
PIF1Q9H611 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PIF1Q9H611 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.21■□□□□ 0.03
PIF1Q9H611 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.21■□□□□ 0.03
PIF1Q9H611 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
PIF1Q9H611 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PIF1Q9H611 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PIF1Q9H611 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.21■□□□□ 0.02
PIF1Q9H611 AC139749.1-202ENST00000617529 3139 ntBASIC15.21■□□□□ 0.02
PIF1Q9H611 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
PIF1Q9H611 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.21■□□□□ 0.02
PIF1Q9H611 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.21■□□□□ 0.02
PIF1Q9H611 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.2■□□□□ 0.02
PIF1Q9H611 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.2■□□□□ 0.02
PIF1Q9H611 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.2■□□□□ 0.02
PIF1Q9H611 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
PIF1Q9H611 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.2■□□□□ 0.02
PIF1Q9H611 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.2■□□□□ 0.02
PIF1Q9H611 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
PIF1Q9H611 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.2■□□□□ 0.02
PIF1Q9H611 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.2■□□□□ 0.02
PIF1Q9H611 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
PIF1Q9H611 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.2■□□□□ 0.02
PIF1Q9H611 AC092910.1-201ENST00000482027 1129 ntBASIC15.2■□□□□ 0.02
PIF1Q9H611 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.2■□□□□ 0.02
PIF1Q9H611 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
PIF1Q9H611 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.2■□□□□ 0.02
PIF1Q9H611 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.2■□□□□ 0.02
PIF1Q9H611 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
PIF1Q9H611 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PIF1Q9H611 AL645728.2-201ENST00000641974 660 ntBASIC15.2■□□□□ 0.02
PIF1Q9H611 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PIF1Q9H611 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PIF1Q9H611 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms