Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 LINC02447-202ENST00000501888 2146 ntBASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 CSH2-206ENST00000560142 749 ntTSL 5 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 AL358472.3-201ENST00000608147 415 ntBASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 CASP16P-204ENST00000635032 809 ntBASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 TUBBP5-203ENST00000508529 1334 ntBASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 AC024681.1-201ENST00000521917 487 ntBASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 MIR4683-201ENST00000579659 81 ntBASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 AC009955.4-201ENST00000597192 544 ntBASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 YRDCP1-201ENST00000621419 643 ntBASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 AL603764.1-201ENST00000636452 321 ntBASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHANK3Q9BYB0 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
SHANK3Q9BYB0 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.95■□□□□ 0.79
SHANK3Q9BYB0 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 RN7SL774P-201ENST00000577467 290 ntBASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 DIO1-215ENST00000610607 796 ntTSL 5 BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 AC092364.2-201ENST00000596710 2692 ntBASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHANK3Q9BYB0 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 AL596276.2-201ENST00000447525 331 ntBASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 MIR3907-201ENST00000579424 151 ntBASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHANK3Q9BYB0 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHANK3Q9BYB0 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms