Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 LINC02199-201ENST00000506655 2702 ntBASIC14.26□□□□□ -0.13
CPNE4Q96A23 AL603832.2-201ENST00000566195 2125 ntBASIC14.26□□□□□ -0.13
CPNE4Q96A23 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 AC074044.1-201ENST00000609673 707 ntBASIC14.25□□□□□ -0.13
CPNE4Q96A23 AC009118.2-201ENST00000613275 655 ntBASIC14.25□□□□□ -0.13
CPNE4Q96A23 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CPNE4Q96A23 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CPNE4Q96A23 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CPNE4Q96A23 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CPNE4Q96A23 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
CPNE4Q96A23 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CPNE4Q96A23 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CPNE4Q96A23 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CPNE4Q96A23 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.24□□□□□ -0.13
CPNE4Q96A23 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.24□□□□□ -0.13
CPNE4Q96A23 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CPNE4Q96A23 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
CPNE4Q96A23 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
CPNE4Q96A23 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CPNE4Q96A23 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CPNE4Q96A23 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.24□□□□□ -0.13
CPNE4Q96A23 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.24□□□□□ -0.13
CPNE4Q96A23 FAM207CP-201ENST00000443486 507 ntBASIC14.24□□□□□ -0.13
CPNE4Q96A23 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CPNE4Q96A23 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CPNE4Q96A23 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CPNE4Q96A23 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.24□□□□□ -0.13
CPNE4Q96A23 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.24□□□□□ -0.13
CPNE4Q96A23 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CPNE4Q96A23 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.24□□□□□ -0.13
CPNE4Q96A23 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.24□□□□□ -0.13
CPNE4Q96A23 AC025048.3-201ENST00000590609 569 ntBASIC14.24□□□□□ -0.13
CPNE4Q96A23 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.24□□□□□ -0.13
CPNE4Q96A23 AC092364.2-202ENST00000597012 1073 ntBASIC14.24□□□□□ -0.13
CPNE4Q96A23 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.24□□□□□ -0.13
CPNE4Q96A23 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.24□□□□□ -0.13
CPNE4Q96A23 AC005702.4-201ENST00000618393 416 ntBASIC14.24□□□□□ -0.13
CPNE4Q96A23 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CPNE4Q96A23 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms