Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AC136604.1-201ENST00000418535 575 ntBASIC15.83■□□□□ 0.12
HMGB4Q8WW32 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 AC106760.1-201ENST00000508690 800 ntBASIC15.83■□□□□ 0.12
HMGB4Q8WW32 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 RNA5SP412-201ENST00000516234 123 ntBASIC15.83■□□□□ 0.12
HMGB4Q8WW32 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 AP001063.1-201ENST00000568332 529 ntBASIC15.83■□□□□ 0.12
HMGB4Q8WW32 MIR6869-201ENST00000619434 62 ntBASIC15.83■□□□□ 0.12
HMGB4Q8WW32 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 ME2P1-201ENST00000426028 1970 ntBASIC15.83■□□□□ 0.12
HMGB4Q8WW32 TUBB1P2-201ENST00000422712 1306 ntBASIC15.83■□□□□ 0.12
HMGB4Q8WW32 TUBB1P1-201ENST00000503144 1300 ntBASIC15.83■□□□□ 0.12
HMGB4Q8WW32 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 AL133338.1-201ENST00000565695 1517 ntBASIC15.83■□□□□ 0.12
HMGB4Q8WW32 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGB4Q8WW32 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 FER1L4-210ENST00000615531 5998 ntBASIC15.82■□□□□ 0.12
HMGB4Q8WW32 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 AC012441.1-201ENST00000446669 685 ntBASIC15.82■□□□□ 0.12
HMGB4Q8WW32 AC093433.1-201ENST00000458048 571 ntBASIC15.82■□□□□ 0.12
HMGB4Q8WW32 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 AL606495.2-201ENST00000605867 535 ntBASIC15.82■□□□□ 0.12
HMGB4Q8WW32 MIR6787-201ENST00000616675 61 ntBASIC15.82■□□□□ 0.12
HMGB4Q8WW32 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 AC005252.2-201ENST00000624630 1141 ntBASIC15.82■□□□□ 0.12
HMGB4Q8WW32 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 KRT8P44-201ENST00000441609 1350 ntBASIC15.82■□□□□ 0.12
HMGB4Q8WW32 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 AL121723.1-201ENST00000445194 1519 ntBASIC15.82■□□□□ 0.12
HMGB4Q8WW32 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 AL607033.1-201ENST00000623900 1599 ntBASIC15.82■□□□□ 0.12
HMGB4Q8WW32 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
HMGB4Q8WW32 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms