Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 BCRP6-201ENST00000510112 632 ntBASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 BCRP7-201ENST00000511549 544 ntBASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 AC104989.1-201ENST00000519711 778 ntBASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 AP005482.1-201ENST00000563722 1273 ntBASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 AC133552.6-201ENST00000613406 534 ntBASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 MIR6799-201ENST00000620297 69 ntBASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNFT1Q5M7Z0 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 KRT43P-201ENST00000434019 910 ntBASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 KRT18P43-201ENST00000469825 1281 ntBASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 RPL13AP25-201ENST00000484130 612 ntBASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 AP001889.1-201ENST00000525414 633 ntBASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 AC005252.2-201ENST00000624630 1141 ntBASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 AL033527.4-201ENST00000641026 673 ntBASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.19□□□□□ -0.14
RNFT1Q5M7Z0 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 AC093525.8-201ENST00000624099 1342 ntBASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 MTHFR-217ENST00000641820 1569 ntBASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 BOLA2P3-201ENST00000404566 256 ntBASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 BNIP3P42-201ENST00000454982 569 ntBASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 CTBP2P5-201ENST00000454986 1264 ntBASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 TNFRSF10A-AS1-201ENST00000518308 637 ntTSL 3 BASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 AC068587.3-201ENST00000526613 355 ntBASIC14.18□□□□□ -0.14
RNFT1Q5M7Z0 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms