Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 EIF3FP3-201ENST00000434851 1086 ntBASIC16.36■□□□□ 0.21
CHD9Q3L8U1 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.36■□□□□ 0.21
CHD9Q3L8U1 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CHD9Q3L8U1 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 RN7SKP214-201ENST00000364208 315 ntBASIC16.35■□□□□ 0.21
CHD9Q3L8U1 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 RNMTL1P1-201ENST00000454103 560 ntBASIC16.35■□□□□ 0.21
CHD9Q3L8U1 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 AC106820.3-201ENST00000561653 397 ntBASIC16.35■□□□□ 0.21
CHD9Q3L8U1 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 NDUFS6P1-201ENST00000485187 316 ntBASIC16.35■□□□□ 0.21
CHD9Q3L8U1 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 RPL17P45-201ENST00000586289 509 ntBASIC16.35■□□□□ 0.21
CHD9Q3L8U1 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 CAP2P1-201ENST00000557743 1390 ntBASIC16.35■□□□□ 0.21
CHD9Q3L8U1 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.35■□□□□ 0.21
CHD9Q3L8U1 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 KRT8P14-201ENST00000414254 1442 ntBASIC16.34■□□□□ 0.21
CHD9Q3L8U1 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 AL136309.1-201ENST00000403917 691 ntBASIC16.34■□□□□ 0.21
CHD9Q3L8U1 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 AC021723.1-201ENST00000486306 515 ntBASIC16.34■□□□□ 0.21
CHD9Q3L8U1 AC116345.2-201ENST00000512837 523 ntBASIC16.34■□□□□ 0.21
CHD9Q3L8U1 AC127024.7-201ENST00000625101 200 ntBASIC16.34■□□□□ 0.21
CHD9Q3L8U1 AC009093.2-202ENST00000620513 2079 ntBASIC16.34■□□□□ 0.21
CHD9Q3L8U1 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 B9D1-203ENST00000395615 805 ntTSL 3 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 AC087045.2-201ENST00000606279 1003 ntBASIC16.34■□□□□ 0.21
CHD9Q3L8U1 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.34■□□□□ 0.21
CHD9Q3L8U1 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 POM121L8P-201ENST00000417732 1281 ntBASIC16.33■□□□□ 0.21
CHD9Q3L8U1 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 POM121L9P-203ENST00000441984 1285 ntBASIC16.33■□□□□ 0.21
CHD9Q3L8U1 AL132994.2-201ENST00000603120 687 ntBASIC16.33■□□□□ 0.21
CHD9Q3L8U1 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 AL023803.2-201ENST00000620080 638 ntBASIC16.33■□□□□ 0.21
CHD9Q3L8U1 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.33■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms