Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC12.84□□□□□ -0.35
CX3CL1P78423 AC013268.4-201ENST00000637413 2228 ntBASIC12.84□□□□□ -0.35
CX3CL1P78423 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC12.84□□□□□ -0.35
CX3CL1P78423 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC12.84□□□□□ -0.35
CX3CL1P78423 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CX3CL1P78423 SUPT20HL2-201ENST00000486479 2409 ntBASIC12.83□□□□□ -0.35
CX3CL1P78423 LINC02447-202ENST00000501888 2146 ntBASIC12.83□□□□□ -0.35
CX3CL1P78423 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CX3CL1P78423 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.35
CX3CL1P78423 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
CX3CL1P78423 NID2-208ENST00000617139 3827 ntTSL 5 BASIC12.83□□□□□ -0.36
CX3CL1P78423 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 GOLGA8DP-202ENST00000341390 2184 ntBASIC12.83□□□□□ -0.36
CX3CL1P78423 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC12.83□□□□□ -0.36
CX3CL1P78423 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC12.83□□□□□ -0.36
CX3CL1P78423 CDC14C-201ENST00000428251 1719 ntBASIC12.83□□□□□ -0.36
CX3CL1P78423 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC12.83□□□□□ -0.36
CX3CL1P78423 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC12.83□□□□□ -0.36
CX3CL1P78423 AC069224.1-201ENST00000566372 1715 ntBASIC12.83□□□□□ -0.36
CX3CL1P78423 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC12.83□□□□□ -0.36
CX3CL1P78423 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC12.83□□□□□ -0.36
CX3CL1P78423 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
CX3CL1P78423 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
CX3CL1P78423 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
CX3CL1P78423 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC12.83□□□□□ -0.36
CX3CL1P78423 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC12.83□□□□□ -0.36
CX3CL1P78423 RBPMS2P1-201ENST00000437762 623 ntBASIC12.83□□□□□ -0.36
CX3CL1P78423 DNAJB3-202ENST00000449667 1266 ntBASIC12.83□□□□□ -0.36
CX3CL1P78423 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
CX3CL1P78423 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC12.83□□□□□ -0.36
CX3CL1P78423 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC12.83□□□□□ -0.36
CX3CL1P78423 AC023141.5-201ENST00000458585 616 ntBASIC12.83□□□□□ -0.36
CX3CL1P78423 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC12.83□□□□□ -0.36
CX3CL1P78423 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC12.83□□□□□ -0.36
CX3CL1P78423 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
CX3CL1P78423 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC12.83□□□□□ -0.36
CX3CL1P78423 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
CX3CL1P78423 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 AC009093.7-201ENST00000623853 1223 ntBASIC12.83□□□□□ -0.36
CX3CL1P78423 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC12.83□□□□□ -0.36
CX3CL1P78423 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CX3CL1P78423 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
CX3CL1P78423 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
CX3CL1P78423 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CX3CL1P78423 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC12.83□□□□□ -0.36
CX3CL1P78423 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CX3CL1P78423 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC12.82□□□□□ -0.36
CX3CL1P78423 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC12.82□□□□□ -0.36
CX3CL1P78423 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.82□□□□□ -0.36
CX3CL1P78423 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC12.82□□□□□ -0.36
CX3CL1P78423 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
CX3CL1P78423 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC12.82□□□□□ -0.36
CX3CL1P78423 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CX3CL1P78423 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC12.82□□□□□ -0.36
CX3CL1P78423 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC12.82□□□□□ -0.36
CX3CL1P78423 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC12.82□□□□□ -0.36
CX3CL1P78423 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC12.82□□□□□ -0.36
CX3CL1P78423 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
CX3CL1P78423 MAX-210ENST00000555419 765 ntTSL 5 BASIC12.82□□□□□ -0.36
CX3CL1P78423 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC12.82□□□□□ -0.36
CX3CL1P78423 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC12.82□□□□□ -0.36
CX3CL1P78423 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC12.82□□□□□ -0.36
CX3CL1P78423 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC12.82□□□□□ -0.36
CX3CL1P78423 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC12.82□□□□□ -0.36
CX3CL1P78423 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC12.82□□□□□ -0.36
CX3CL1P78423 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
CX3CL1P78423 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
CX3CL1P78423 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CX3CL1P78423 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms