Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGCS2P54868 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
HMGCS2P54868 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGCS2P54868 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 AL138709.1-201ENST00000614840 1693 ntBASIC18.1■□□□□ 0.49
HMGCS2P54868 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGCS2P54868 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGCS2P54868 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 KRT8P35-201ENST00000483942 1338 ntBASIC18.1■□□□□ 0.49
HMGCS2P54868 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGCS2P54868 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
HMGCS2P54868 GOLGA2P4-201ENST00000441462 777 ntBASIC18.1■□□□□ 0.49
HMGCS2P54868 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGCS2P54868 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC18.1■□□□□ 0.49
HMGCS2P54868 HNRNPA1P48-202ENST00000565308 961 ntBASIC18.1■□□□□ 0.49
HMGCS2P54868 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGCS2P54868 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGCS2P54868 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HMGCS2P54868 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGCS2P54868 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGCS2P54868 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGCS2P54868 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGCS2P54868 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
HMGCS2P54868 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
HMGCS2P54868 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGCS2P54868 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGCS2P54868 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGCS2P54868 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGCS2P54868 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGCS2P54868 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGCS2P54868 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGCS2P54868 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
HMGCS2P54868 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGCS2P54868 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGCS2P54868 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGCS2P54868 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
HMGCS2P54868 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC18.09■□□□□ 0.49
HMGCS2P54868 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGCS2P54868 AC006033.1-201ENST00000440505 426 ntBASIC18.09■□□□□ 0.49
HMGCS2P54868 AL590640.2-201ENST00000457038 527 ntBASIC18.09■□□□□ 0.49
HMGCS2P54868 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC18.09■□□□□ 0.49
HMGCS2P54868 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGCS2P54868 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.09■□□□□ 0.49
HMGCS2P54868 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.09■□□□□ 0.49
HMGCS2P54868 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC18.09■□□□□ 0.49
HMGCS2P54868 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC18.09■□□□□ 0.49
HMGCS2P54868 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.09■□□□□ 0.49
HMGCS2P54868 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC18.09■□□□□ 0.49
HMGCS2P54868 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.09■□□□□ 0.49
HMGCS2P54868 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
HMGCS2P54868 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGCS2P54868 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGCS2P54868 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
HMGCS2P54868 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGCS2P54868 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.09■□□□□ 0.49
HMGCS2P54868 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
HMGCS2P54868 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HMGCS2P54868 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HMGCS2P54868 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.08■□□□□ 0.49
HMGCS2P54868 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.08■□□□□ 0.49
HMGCS2P54868 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HMGCS2P54868 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HMGCS2P54868 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
HMGCS2P54868 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
HMGCS2P54868 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGCS2P54868 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGCS2P54868 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGCS2P54868 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGCS2P54868 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGCS2P54868 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGCS2P54868 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGCS2P54868 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC18.08■□□□□ 0.48
HMGCS2P54868 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGCS2P54868 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC18.08■□□□□ 0.48
HMGCS2P54868 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGCS2P54868 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC18.08■□□□□ 0.48
HMGCS2P54868 MIR4741-201ENST00000579822 90 ntBASIC18.08■□□□□ 0.48
HMGCS2P54868 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC18.08■□□□□ 0.48
HMGCS2P54868 AD000864.1-201ENST00000624076 2295 ntBASIC18.08■□□□□ 0.48
HMGCS2P54868 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms