Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.46■□□□□ 0.23
EPHB3P54753 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.46■□□□□ 0.23
EPHB3P54753 AP001063.1-201ENST00000568332 529 ntBASIC16.46■□□□□ 0.23
EPHB3P54753 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.46■□□□□ 0.23
EPHB3P54753 MIR4259-201ENST00000584466 101 ntBASIC16.46■□□□□ 0.23
EPHB3P54753 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.46■□□□□ 0.23
EPHB3P54753 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.46■□□□□ 0.23
EPHB3P54753 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.46■□□□□ 0.23
EPHB3P54753 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
EPHB3P54753 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.46■□□□□ 0.23
EPHB3P54753 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
EPHB3P54753 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
EPHB3P54753 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
EPHB3P54753 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.22
EPHB3P54753 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
EPHB3P54753 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
EPHB3P54753 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
EPHB3P54753 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
EPHB3P54753 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
EPHB3P54753 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.45■□□□□ 0.22
EPHB3P54753 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.45■□□□□ 0.22
EPHB3P54753 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC16.45■□□□□ 0.22
EPHB3P54753 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.45■□□□□ 0.22
EPHB3P54753 KLF2P4-201ENST00000451959 1225 ntBASIC16.45■□□□□ 0.22
EPHB3P54753 AC119751.2-201ENST00000504529 210 ntBASIC16.45■□□□□ 0.22
EPHB3P54753 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.45■□□□□ 0.22
EPHB3P54753 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.45■□□□□ 0.22
EPHB3P54753 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
EPHB3P54753 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
EPHB3P54753 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
EPHB3P54753 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
EPHB3P54753 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.45■□□□□ 0.22
EPHB3P54753 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
EPHB3P54753 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
EPHB3P54753 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
EPHB3P54753 PDIA3P1-201ENST00000471856 1510 ntBASIC16.45■□□□□ 0.22
EPHB3P54753 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.44■□□□□ 0.22
EPHB3P54753 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.44■□□□□ 0.22
EPHB3P54753 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
EPHB3P54753 BAATP1-201ENST00000412284 1225 ntBASIC16.44■□□□□ 0.22
EPHB3P54753 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.44■□□□□ 0.22
EPHB3P54753 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.44■□□□□ 0.22
EPHB3P54753 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.44■□□□□ 0.22
EPHB3P54753 CTBP2P5-201ENST00000454986 1264 ntBASIC16.44■□□□□ 0.22
EPHB3P54753 AC026410.3-201ENST00000514280 936 ntBASIC16.44■□□□□ 0.22
EPHB3P54753 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.44■□□□□ 0.22
EPHB3P54753 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 CLUHP6-201ENST00000580789 941 ntBASIC16.44■□□□□ 0.22
EPHB3P54753 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
EPHB3P54753 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
EPHB3P54753 AC093813.1-201ENST00000605066 256 ntBASIC16.44■□□□□ 0.22
EPHB3P54753 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.44■□□□□ 0.22
EPHB3P54753 MIR6799-201ENST00000620297 69 ntBASIC16.44■□□□□ 0.22
EPHB3P54753 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
EPHB3P54753 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.44■□□□□ 0.22
EPHB3P54753 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
EPHB3P54753 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.44■□□□□ 0.22
EPHB3P54753 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.44■□□□□ 0.22
EPHB3P54753 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.44■□□□□ 0.22
EPHB3P54753 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
EPHB3P54753 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
EPHB3P54753 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
EPHB3P54753 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
EPHB3P54753 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms