Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH6P52701 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC21.55■■□□□ 1.04
MSH6P52701 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH6P52701 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH6P52701 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH6P52701 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC21.55■■□□□ 1.04
MSH6P52701 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH6P52701 ANKRD30BP2-201ENST00000435744 1610 ntBASIC21.55■■□□□ 1.04
MSH6P52701 AL627389.1-201ENST00000413508 1182 ntBASIC21.55■■□□□ 1.04
MSH6P52701 RGS5-214ENST00000429865 754 ntTSL 3 BASIC21.55■■□□□ 1.04
MSH6P52701 FGFR3P1-201ENST00000449999 601 ntBASIC21.55■■□□□ 1.04
MSH6P52701 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC21.55■■□□□ 1.04
MSH6P52701 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC21.55■■□□□ 1.04
MSH6P52701 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC21.55■■□□□ 1.04
MSH6P52701 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC21.55■■□□□ 1.04
MSH6P52701 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC21.55■■□□□ 1.04
MSH6P52701 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
MSH6P52701 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH6P52701 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH6P52701 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH6P52701 KRT8P29-201ENST00000420409 1371 ntBASIC21.55■■□□□ 1.04
MSH6P52701 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH6P52701 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
MSH6P52701 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MSH6P52701 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC21.54■■□□□ 1.04
MSH6P52701 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC21.54■■□□□ 1.04
MSH6P52701 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH6P52701 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
MSH6P52701 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
MSH6P52701 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
MSH6P52701 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
MSH6P52701 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC21.54■■□□□ 1.04
MSH6P52701 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH6P52701 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
MSH6P52701 SLC16A6P1-201ENST00000413214 1059 ntBASIC21.54■■□□□ 1.04
MSH6P52701 CEP164P1-201ENST00000455142 418 ntBASIC21.54■■□□□ 1.04
MSH6P52701 CFL1-206ENST00000527344 962 ntTSL 2 BASIC21.54■■□□□ 1.04
MSH6P52701 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH6P52701 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC21.54■■□□□ 1.04
MSH6P52701 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC21.54■■□□□ 1.04
MSH6P52701 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC21.54■■□□□ 1.04
MSH6P52701 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH6P52701 AL805961.1-203ENST00000641078 1258 ntBASIC21.54■■□□□ 1.04
MSH6P52701 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC21.54■■□□□ 1.04
MSH6P52701 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
MSH6P52701 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH6P52701 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
MSH6P52701 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH6P52701 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
MSH6P52701 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC21.54■■□□□ 1.04
MSH6P52701 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC21.54■■□□□ 1.04
MSH6P52701 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
MSH6P52701 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH6P52701 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC21.54■■□□□ 1.04
MSH6P52701 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH6P52701 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH6P52701 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
MSH6P52701 AC078925.2-201ENST00000624013 1973 ntBASIC21.53■■□□□ 1.04
MSH6P52701 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
MSH6P52701 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
MSH6P52701 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC21.53■■□□□ 1.04
MSH6P52701 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC21.53■■□□□ 1.04
MSH6P52701 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC21.53■■□□□ 1.04
MSH6P52701 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC21.53■■□□□ 1.04
MSH6P52701 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC21.53■■□□□ 1.04
MSH6P52701 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC21.53■■□□□ 1.04
MSH6P52701 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
MSH6P52701 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
MSH6P52701 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
MSH6P52701 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH6P52701 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
MSH6P52701 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC21.52■■□□□ 1.04
MSH6P52701 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH6P52701 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH6P52701 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH6P52701 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC21.52■■□□□ 1.04
MSH6P52701 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC21.52■■□□□ 1.04
MSH6P52701 B9D1-203ENST00000395615 805 ntTSL 3 BASIC21.52■■□□□ 1.04
MSH6P52701 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC21.52■■□□□ 1.04
MSH6P52701 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC21.52■■□□□ 1.04
MSH6P52701 RN7SL8P-201ENST00000461771 266 ntBASIC21.52■■□□□ 1.04
MSH6P52701 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH6P52701 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC21.52■■□□□ 1.04
MSH6P52701 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC21.52■■□□□ 1.04
MSH6P52701 AC135983.4-201ENST00000564116 1262 ntBASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms