Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MIR3909-201ENST00000579518 119 ntBASIC13.03□□□□□ -0.32
CDX1P47902 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC13.03□□□□□ -0.32
CDX1P47902 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC13.03□□□□□ -0.32
CDX1P47902 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC13.03□□□□□ -0.32
CDX1P47902 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC13.03□□□□□ -0.32
CDX1P47902 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CDX1P47902 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
CDX1P47902 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.03□□□□□ -0.32
CDX1P47902 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC13.03□□□□□ -0.32
CDX1P47902 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.03□□□□□ -0.32
CDX1P47902 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC13.03□□□□□ -0.32
CDX1P47902 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC13.03□□□□□ -0.32
CDX1P47902 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CDX1P47902 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC13.02□□□□□ -0.32
CDX1P47902 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
CDX1P47902 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CDX1P47902 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.02□□□□□ -0.32
CDX1P47902 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC13.02□□□□□ -0.32
CDX1P47902 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 PMS2P4-201ENST00000412466 1052 ntBASIC13.02□□□□□ -0.33
CDX1P47902 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC13.02□□□□□ -0.33
CDX1P47902 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.02□□□□□ -0.33
CDX1P47902 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC13.02□□□□□ -0.33
CDX1P47902 AL671277.1-201ENST00000429656 993 ntBASIC13.02□□□□□ -0.33
CDX1P47902 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC13.02□□□□□ -0.33
CDX1P47902 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC13.02□□□□□ -0.33
CDX1P47902 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC13.02□□□□□ -0.33
CDX1P47902 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC13.02□□□□□ -0.33
CDX1P47902 GATB-205ENST00000508611 605 ntTSL 2 BASIC13.02□□□□□ -0.33
CDX1P47902 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC13.02□□□□□ -0.33
CDX1P47902 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 AL009183.1-201ENST00000603760 355 ntBASIC13.02□□□□□ -0.33
CDX1P47902 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC13.02□□□□□ -0.33
CDX1P47902 AL596442.2-201ENST00000610240 980 ntBASIC13.02□□□□□ -0.33
CDX1P47902 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 AC010327.5-201ENST00000586923 3061 ntBASIC13.02□□□□□ -0.33
CDX1P47902 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
CDX1P47902 SLC22A20-204ENST00000530038 1673 ntBASIC13.02□□□□□ -0.33
CDX1P47902 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
CDX1P47902 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
CDX1P47902 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
CDX1P47902 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC13.01□□□□□ -0.33
CDX1P47902 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.01□□□□□ -0.33
CDX1P47902 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC13.01□□□□□ -0.33
CDX1P47902 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC13.01□□□□□ -0.33
CDX1P47902 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
CDX1P47902 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms