Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC18.23■□□□□ 0.51
SCN4AP35499 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC18.23■□□□□ 0.51
SCN4AP35499 AC007881.3-201ENST00000608897 607 ntBASIC18.23■□□□□ 0.51
SCN4AP35499 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC18.23■□□□□ 0.51
SCN4AP35499 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SCN4AP35499 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SCN4AP35499 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SCN4AP35499 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SCN4AP35499 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SCN4AP35499 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SCN4AP35499 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.23■□□□□ 0.51
SCN4AP35499 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
SCN4AP35499 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SCN4AP35499 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SCN4AP35499 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SCN4AP35499 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SCN4AP35499 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SCN4AP35499 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SCN4AP35499 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.23■□□□□ 0.51
SCN4AP35499 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SCN4AP35499 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.23■□□□□ 0.51
SCN4AP35499 IDS-203ENST00000428056 1213 ntTSL 2 BASIC18.23■□□□□ 0.51
SCN4AP35499 RPL7P35-201ENST00000446943 740 ntBASIC18.23■□□□□ 0.51
SCN4AP35499 HNRNPA1P36-201ENST00000521313 955 ntBASIC18.23■□□□□ 0.51
SCN4AP35499 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC18.23■□□□□ 0.51
SCN4AP35499 AL031713.1-201ENST00000564813 661 ntBASIC18.23■□□□□ 0.51
SCN4AP35499 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC18.23■□□□□ 0.51
SCN4AP35499 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.23■□□□□ 0.51
SCN4AP35499 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SCN4AP35499 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC18.23■□□□□ 0.51
SCN4AP35499 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SCN4AP35499 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SCN4AP35499 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SCN4AP35499 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 CAP2P1-201ENST00000557743 1390 ntBASIC18.22■□□□□ 0.51
SCN4AP35499 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
SCN4AP35499 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SCN4AP35499 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC18.22■□□□□ 0.51
SCN4AP35499 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SCN4AP35499 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC18.22■□□□□ 0.51
SCN4AP35499 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC18.22■□□□□ 0.51
SCN4AP35499 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC18.22■□□□□ 0.51
SCN4AP35499 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC18.22■□□□□ 0.51
SCN4AP35499 MIR4683-201ENST00000579659 81 ntBASIC18.22■□□□□ 0.51
SCN4AP35499 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
SCN4AP35499 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 AC105020.1-201ENST00000435356 2205 ntBASIC18.22■□□□□ 0.51
SCN4AP35499 AL008718.2-201ENST00000609206 1313 ntBASIC18.22■□□□□ 0.51
SCN4AP35499 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.22■□□□□ 0.51
SCN4AP35499 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
SCN4AP35499 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.22■□□□□ 0.51
SCN4AP35499 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SCN4AP35499 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.21■□□□□ 0.51
SCN4AP35499 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SCN4AP35499 AC079112.1-201ENST00000454972 939 ntBASIC18.21■□□□□ 0.51
SCN4AP35499 AL157792.1-201ENST00000488281 530 ntBASIC18.21■□□□□ 0.51
SCN4AP35499 MESTP3-201ENST00000503460 968 ntBASIC18.21■□□□□ 0.51
SCN4AP35499 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC18.21■□□□□ 0.51
SCN4AP35499 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC18.21■□□□□ 0.51
SCN4AP35499 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC18.21■□□□□ 0.51
SCN4AP35499 AL022344.2-201ENST00000568976 968 ntBASIC18.21■□□□□ 0.51
SCN4AP35499 SNORD3B-2-202ENST00000571722 791 ntBASIC18.21■□□□□ 0.51
SCN4AP35499 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC18.21■□□□□ 0.51
SCN4AP35499 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC18.21■□□□□ 0.51
SCN4AP35499 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC18.21■□□□□ 0.51
SCN4AP35499 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SCN4AP35499 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 AC018470.1-201ENST00000624790 3129 ntBASIC18.21■□□□□ 0.51
SCN4AP35499 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
SCN4AP35499 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC18.21■□□□□ 0.51
SCN4AP35499 AP000593.2-201ENST00000542775 1433 ntBASIC18.21■□□□□ 0.51
SCN4AP35499 UBALD1-205ENST00000590891 2641 ntBASIC18.21■□□□□ 0.51
SCN4AP35499 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms