Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
SLC28A1O00337 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 AC099063.4-201ENST00000641099 1602 ntBASIC15.28■□□□□ 0.04
SLC28A1O00337 AP3S2-216ENST00000617003 1561 ntBASIC15.28■□□□□ 0.04
SLC28A1O00337 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.28■□□□□ 0.04
SLC28A1O00337 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.28■□□□□ 0.04
SLC28A1O00337 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 UXT-AS1-201ENST00000590504 1525 ntBASIC15.28■□□□□ 0.04
SLC28A1O00337 AC023824.1-201ENST00000562945 2975 ntBASIC15.28■□□□□ 0.04
SLC28A1O00337 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
SLC28A1O00337 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SLC28A1O00337 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SLC28A1O00337 YBX2P1-201ENST00000394192 760 ntBASIC15.28■□□□□ 0.04
SLC28A1O00337 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.28■□□□□ 0.04
SLC28A1O00337 TIMM8BP1-201ENST00000452384 211 ntBASIC15.28■□□□□ 0.04
SLC28A1O00337 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.28■□□□□ 0.04
SLC28A1O00337 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.28■□□□□ 0.04
SLC28A1O00337 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.28■□□□□ 0.04
SLC28A1O00337 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.28■□□□□ 0.04
SLC28A1O00337 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.28■□□□□ 0.04
SLC28A1O00337 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.28■□□□□ 0.04
SLC28A1O00337 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.28■□□□□ 0.04
SLC28A1O00337 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SLC28A1O00337 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SLC28A1O00337 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.28■□□□□ 0.04
SLC28A1O00337 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.28■□□□□ 0.04
SLC28A1O00337 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SLC28A1O00337 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SLC28A1O00337 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SLC28A1O00337 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.28■□□□□ 0.04
SLC28A1O00337 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.27■□□□□ 0.04
SLC28A1O00337 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
SLC28A1O00337 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.04
SLC28A1O00337 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.27■□□□□ 0.04
SLC28A1O00337 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.27■□□□□ 0.04
SLC28A1O00337 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.27■□□□□ 0.04
SLC28A1O00337 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
SLC28A1O00337 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.27■□□□□ 0.04
SLC28A1O00337 AC009090.5-201ENST00000624886 2285 ntBASIC15.27■□□□□ 0.04
SLC28A1O00337 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
SLC28A1O00337 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
SLC28A1O00337 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
SLC28A1O00337 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.27■□□□□ 0.04
SLC28A1O00337 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.27■□□□□ 0.04
SLC28A1O00337 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC15.27■□□□□ 0.04
SLC28A1O00337 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.27■□□□□ 0.04
SLC28A1O00337 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.27■□□□□ 0.04
SLC28A1O00337 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.27■□□□□ 0.04
SLC28A1O00337 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
SLC28A1O00337 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.27■□□□□ 0.04
SLC28A1O00337 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
SLC28A1O00337 C20orf181-201ENST00000623918 480 ntBASIC15.27■□□□□ 0.04
SLC28A1O00337 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SLC28A1O00337 AC084121.4-201ENST00000641598 221 ntBASIC15.27■□□□□ 0.04
SLC28A1O00337 AF228730.8-201ENST00000642140 221 ntBASIC15.27■□□□□ 0.04
SLC28A1O00337 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SLC28A1O00337 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SLC28A1O00337 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SLC28A1O00337 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.27■□□□□ 0.03
SLC28A1O00337 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SLC28A1O00337 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SLC28A1O00337 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.27■□□□□ 0.03
SLC28A1O00337 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms