Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC188H7C350 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC188H7C350 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.5■□□□□ 0.23
CCDC188H7C350 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.5■□□□□ 0.23
CCDC188H7C350 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.5■□□□□ 0.23
CCDC188H7C350 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CCDC188H7C350 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC188H7C350 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC188H7C350 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC188H7C350 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.5■□□□□ 0.23
CCDC188H7C350 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.5■□□□□ 0.23
CCDC188H7C350 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC188H7C350 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.5■□□□□ 0.23
CCDC188H7C350 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CCDC188H7C350 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.5■□□□□ 0.23
CCDC188H7C350 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC188H7C350 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC188H7C350 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC188H7C350 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC188H7C350 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC188H7C350 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CCDC188H7C350 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC188H7C350 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC188H7C350 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC188H7C350 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC188H7C350 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CCDC188H7C350 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC188H7C350 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC188H7C350 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CCDC188H7C350 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC188H7C350 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC188H7C350 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC188H7C350 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC188H7C350 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC188H7C350 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CCDC188H7C350 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CCDC188H7C350 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC188H7C350 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC188H7C350 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
CCDC188H7C350 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CCDC188H7C350 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CCDC188H7C350 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CCDC188H7C350 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CCDC188H7C350 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC188H7C350 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC188H7C350 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC188H7C350 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC188H7C350 RPS8P6-201ENST00000426177 609 ntBASIC16.49■□□□□ 0.23
CCDC188H7C350 AC009947.1-201ENST00000444350 727 ntBASIC16.49■□□□□ 0.23
CCDC188H7C350 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.49■□□□□ 0.23
CCDC188H7C350 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC188H7C350 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC188H7C350 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.49■□□□□ 0.23
CCDC188H7C350 AC148477.8-201ENST00000624298 468 ntBASIC16.49■□□□□ 0.23
CCDC188H7C350 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CCDC188H7C350 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC188H7C350 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC188H7C350 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC188H7C350 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC188H7C350 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC188H7C350 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC188H7C350 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC188H7C350 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CCDC188H7C350 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC188H7C350 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC188H7C350 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.48■□□□□ 0.23
CCDC188H7C350 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC188H7C350 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
CCDC188H7C350 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
CCDC188H7C350 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CCDC188H7C350 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CCDC188H7C350 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
CCDC188H7C350 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 AC098831.1-202ENST00000438821 336 ntBASIC16.48■□□□□ 0.23
CCDC188H7C350 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.48■□□□□ 0.23
CCDC188H7C350 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC188H7C350 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC188H7C350 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC188H7C350 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC188H7C350 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.48■□□□□ 0.23
CCDC188H7C350 SPTSSB-204ENST00000617024 1292 ntBASIC16.48■□□□□ 0.23
CCDC188H7C350 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC188H7C350 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC188H7C350 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CCDC188H7C350 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC188H7C350 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms