Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 AL391280.1-201ENST00000506969 1062 ntBASIC12.01□□□□□ -0.49
COL6A5A8TX70 AC124947.2-201ENST00000547118 1133 ntBASIC12.01□□□□□ -0.49
COL6A5A8TX70 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 HNRNPA1P58-201ENST00000403629 610 ntBASIC12.01□□□□□ -0.49
COL6A5A8TX70 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 RN7SL163P-201ENST00000583100 276 ntBASIC12.01□□□□□ -0.49
COL6A5A8TX70 AC008805.1-201ENST00000590892 364 ntBASIC12.01□□□□□ -0.49
COL6A5A8TX70 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 AC148477.4-201ENST00000613430 1793 ntBASIC12.01□□□□□ -0.49
COL6A5A8TX70 BX323043.1-201ENST00000641006 1765 ntBASIC12.01□□□□□ -0.49
COL6A5A8TX70 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC12□□□□□ -0.49
COL6A5A8TX70 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
COL6A5A8TX70 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC12□□□□□ -0.49
COL6A5A8TX70 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC12□□□□□ -0.49
COL6A5A8TX70 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
COL6A5A8TX70 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC12□□□□□ -0.49
COL6A5A8TX70 AC092638.2-201ENST00000441105 947 ntBASIC12□□□□□ -0.49
COL6A5A8TX70 NDUFS6P1-201ENST00000485187 316 ntBASIC12□□□□□ -0.49
COL6A5A8TX70 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC12□□□□□ -0.49
COL6A5A8TX70 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC12□□□□□ -0.49
COL6A5A8TX70 AC009955.4-201ENST00000597192 544 ntBASIC12□□□□□ -0.49
COL6A5A8TX70 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC12□□□□□ -0.49
COL6A5A8TX70 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
COL6A5A8TX70 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
COL6A5A8TX70 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC12□□□□□ -0.49
COL6A5A8TX70 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
COL6A5A8TX70 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC12□□□□□ -0.49
COL6A5A8TX70 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
COL6A5A8TX70 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
COL6A5A8TX70 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
COL6A5A8TX70 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC12□□□□□ -0.49
COL6A5A8TX70 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC12□□□□□ -0.49
COL6A5A8TX70 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
COL6A5A8TX70 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC12□□□□□ -0.49
COL6A5A8TX70 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
COL6A5A8TX70 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
COL6A5A8TX70 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC12□□□□□ -0.49
COL6A5A8TX70 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC12□□□□□ -0.49
COL6A5A8TX70 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC12□□□□□ -0.49
COL6A5A8TX70 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC12□□□□□ -0.49
COL6A5A8TX70 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC12□□□□□ -0.49
COL6A5A8TX70 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC12□□□□□ -0.49
COL6A5A8TX70 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
COL6A5A8TX70 HLA-J-204ENST00000495278 958 ntBASIC12□□□□□ -0.49
COL6A5A8TX70 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC12□□□□□ -0.49
COL6A5A8TX70 IGHEP1-201ENST00000521393 651 ntBASIC12□□□□□ -0.49
COL6A5A8TX70 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC12□□□□□ -0.49
COL6A5A8TX70 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
COL6A5A8TX70 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC12□□□□□ -0.49
COL6A5A8TX70 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC12□□□□□ -0.49
COL6A5A8TX70 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
COL6A5A8TX70 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC12□□□□□ -0.49
COL6A5A8TX70 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC12□□□□□ -0.49
COL6A5A8TX70 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
COL6A5A8TX70 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC12□□□□□ -0.49
COL6A5A8TX70 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
COL6A5A8TX70 JPT2-203ENST00000382711 894 ntTSL 4 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
COL6A5A8TX70 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC11.99□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms