Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
KLHL28Q9NXS3 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
KLHL28Q9NXS3 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.88□□□□□ -0.03
KLHL28Q9NXS3 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
KLHL28Q9NXS3 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.88□□□□□ -0.03
KLHL28Q9NXS3 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
KLHL28Q9NXS3 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
KLHL28Q9NXS3 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
KLHL28Q9NXS3 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
KLHL28Q9NXS3 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.88□□□□□ -0.03
KLHL28Q9NXS3 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
KLHL28Q9NXS3 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
KLHL28Q9NXS3 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
KLHL28Q9NXS3 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 RFPL4AP1-201ENST00000530883 850 ntBASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 AKAP8P1-201ENST00000434743 1349 ntBASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
KLHL28Q9NXS3 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 AC067750.1-201ENST00000608826 6545 ntBASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 TSEN15P1-201ENST00000423257 515 ntBASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 AL645939.2-201ENST00000427340 991 ntBASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 CYMP-203ENST00000474680 1263 ntBASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 AC073389.1-201ENST00000595595 795 ntBASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 AC004835.2-201ENST00000603762 682 ntBASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 SPTSSB-204ENST00000617024 1292 ntBASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
KLHL28Q9NXS3 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms