Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC87Q9NVE4 RPSAP36-202ENST00000494591 1261 ntBASIC19.82■□□□□ 0.76
CCDC87Q9NVE4 TBCB-211ENST00000589996 724 ntTSL 3 BASIC19.82■□□□□ 0.76
CCDC87Q9NVE4 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC87Q9NVE4 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC19.82■□□□□ 0.76
CCDC87Q9NVE4 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC87Q9NVE4 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC87Q9NVE4 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC87Q9NVE4 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC87Q9NVE4 AGGF1P2-201ENST00000426656 2106 ntBASIC19.82■□□□□ 0.76
CCDC87Q9NVE4 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CCDC87Q9NVE4 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC87Q9NVE4 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC87Q9NVE4 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC87Q9NVE4 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 RNU1-114P-201ENST00000365297 166 ntBASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 CD8B2-202ENST00000417670 633 ntBASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 AP006547.1-201ENST00000563435 692 ntBASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 EEF1DP1-201ENST00000585891 896 ntBASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 HARS-202ENST00000415192 1401 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC87Q9NVE4 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 AC080080.1-201ENST00000625121 2420 ntBASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 AL662890.1-201ENST00000396818 632 ntBASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 KLF2P2-201ENST00000416807 1039 ntBASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 AC004898.1-201ENST00000451057 766 ntBASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 AC091804.1-201ENST00000486888 567 ntBASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 RERG-205ENST00000537647 935 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 AC104982.3-201ENST00000581995 514 ntBASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 KC6-205ENST00000599934 556 ntTSL 4 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 GPR39-203ENST00000622084 900 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC87Q9NVE4 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 MPV17-205ENST00000402310 906 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 AC005077.2-201ENST00000449786 690 ntBASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms