Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC15.69■□□□□ 0.1
TTC28Q96AY4 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TTC28Q96AY4 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
TTC28Q96AY4 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
TTC28Q96AY4 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TTC28Q96AY4 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TTC28Q96AY4 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TTC28Q96AY4 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC15.69■□□□□ 0.1
TTC28Q96AY4 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC15.69■□□□□ 0.1
TTC28Q96AY4 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TTC28Q96AY4 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TTC28Q96AY4 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
TTC28Q96AY4 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC15.69■□□□□ 0.1
TTC28Q96AY4 AC093909.3-201ENST00000504783 336 ntBASIC15.69■□□□□ 0.1
TTC28Q96AY4 MRPL22P1-201ENST00000505398 616 ntBASIC15.69■□□□□ 0.1
TTC28Q96AY4 PHBP15-201ENST00000574228 665 ntBASIC15.69■□□□□ 0.1
TTC28Q96AY4 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC15.69■□□□□ 0.1
TTC28Q96AY4 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TTC28Q96AY4 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TTC28Q96AY4 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TTC28Q96AY4 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TTC28Q96AY4 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TTC28Q96AY4 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 AC106820.2-201ENST00000563775 3264 ntBASIC15.68■□□□□ 0.1
TTC28Q96AY4 BAK1P1-201ENST00000317045 636 ntBASIC15.68■□□□□ 0.1
TTC28Q96AY4 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 AC078875.1-201ENST00000431907 724 ntBASIC15.68■□□□□ 0.1
TTC28Q96AY4 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 ELP5-212ENST00000574255 671 ntTSL 2 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TTC28Q96AY4 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TTC28Q96AY4 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TTC28Q96AY4 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TTC28Q96AY4 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TTC28Q96AY4 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TTC28Q96AY4 KRT17P5-201ENST00000332088 839 ntBASIC15.68■□□□□ 0.1
TTC28Q96AY4 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TTC28Q96AY4 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TTC28Q96AY4 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TTC28Q96AY4 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 SNORD3B-2-202ENST00000571722 791 ntBASIC15.68■□□□□ 0.1
TTC28Q96AY4 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 AL451007.2-201ENST00000632004 563 ntBASIC15.68■□□□□ 0.1
TTC28Q96AY4 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.68■□□□□ 0.1
TTC28Q96AY4 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TTC28Q96AY4 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TTC28Q96AY4 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
TTC28Q96AY4 Z69890.1-201ENST00000382990 339 ntBASIC15.67■□□□□ 0.1
TTC28Q96AY4 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TTC28Q96AY4 AL139094.1-201ENST00000405549 1188 ntBASIC15.67■□□□□ 0.1
TTC28Q96AY4 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 AC011462.4-201ENST00000616866 449 ntBASIC15.67■□□□□ 0.1
TTC28Q96AY4 AL136295.7-201ENST00000619226 1200 ntBASIC15.67■□□□□ 0.1
TTC28Q96AY4 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TTC28Q96AY4 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TTC28Q96AY4 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TTC28Q96AY4 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 EMC4-208ENST00000559078 599 ntTSL 3 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 AC142086.5-202ENST00000562500 217 ntBASIC15.67■□□□□ 0.1
TTC28Q96AY4 PSME2-217ENST00000615264 874 ntTSL 5 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 PSME2-218ENST00000630027 185 ntTSL 3 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TTC28Q96AY4 COMP-202ENST00000425807 2292 ntTSL 2 BASIC15.67■□□□□ 0.1
TTC28Q96AY4 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TTC28Q96AY4 PCGF3-213ENST00000620529 1899 ntBASIC15.66■□□□□ 0.1
TTC28Q96AY4 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.66■□□□□ 0.1
TTC28Q96AY4 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms