Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC20.58■□□□□ 0.89
USP54Q70EL1 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP54Q70EL1 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP54Q70EL1 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
USP54Q70EL1 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
USP54Q70EL1 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
USP54Q70EL1 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
USP54Q70EL1 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
USP54Q70EL1 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP54Q70EL1 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC20.58■□□□□ 0.88
USP54Q70EL1 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC20.58■□□□□ 0.88
USP54Q70EL1 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC20.58■□□□□ 0.88
USP54Q70EL1 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
USP54Q70EL1 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP54Q70EL1 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
USP54Q70EL1 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC20.58■□□□□ 0.88
USP54Q70EL1 ANKRD30BP2-201ENST00000435744 1610 ntBASIC20.58■□□□□ 0.88
USP54Q70EL1 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC20.58■□□□□ 0.88
USP54Q70EL1 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
USP54Q70EL1 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC20.58■□□□□ 0.88
USP54Q70EL1 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC20.58■□□□□ 0.88
USP54Q70EL1 AC104982.3-201ENST00000581995 514 ntBASIC20.58■□□□□ 0.88
USP54Q70EL1 AC020916.1-201ENST00000587762 1774 ntBASIC20.58■□□□□ 0.88
USP54Q70EL1 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC20.58■□□□□ 0.88
USP54Q70EL1 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP54Q70EL1 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP54Q70EL1 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC20.57■□□□□ 0.88
USP54Q70EL1 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC20.57■□□□□ 0.88
USP54Q70EL1 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP54Q70EL1 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
USP54Q70EL1 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC20.57■□□□□ 0.88
USP54Q70EL1 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP54Q70EL1 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP54Q70EL1 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
USP54Q70EL1 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP54Q70EL1 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP54Q70EL1 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP54Q70EL1 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC20.57■□□□□ 0.88
USP54Q70EL1 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP54Q70EL1 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
USP54Q70EL1 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP54Q70EL1 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC20.57■□□□□ 0.88
USP54Q70EL1 HLA-DPB2-205ENST00000435074 1188 ntBASIC20.57■□□□□ 0.88
USP54Q70EL1 AC126915.1-201ENST00000522847 1038 ntBASIC20.57■□□□□ 0.88
USP54Q70EL1 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC20.57■□□□□ 0.88
USP54Q70EL1 INO80C-210ENST00000590757 595 ntTSL 2 BASIC20.57■□□□□ 0.88
USP54Q70EL1 AC244157.2-201ENST00000616239 1006 ntBASIC20.57■□□□□ 0.88
USP54Q70EL1 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP54Q70EL1 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC20.57■□□□□ 0.88
USP54Q70EL1 KRT8P19-201ENST00000551916 1455 ntBASIC20.56■□□□□ 0.88
USP54Q70EL1 RBM38-204ENST00000371219 760 ntTSL 2 BASIC20.56■□□□□ 0.88
USP54Q70EL1 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP54Q70EL1 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP54Q70EL1 PTPA-218ENST00000435132 618 ntTSL 2 BASIC20.56■□□□□ 0.88
USP54Q70EL1 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC20.56■□□□□ 0.88
USP54Q70EL1 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC20.56■□□□□ 0.88
USP54Q70EL1 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC20.56■□□□□ 0.88
USP54Q70EL1 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC20.56■□□□□ 0.88
USP54Q70EL1 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC20.56■□□□□ 0.88
USP54Q70EL1 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC20.56■□□□□ 0.88
USP54Q70EL1 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC20.56■□□□□ 0.88
USP54Q70EL1 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP54Q70EL1 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
USP54Q70EL1 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP54Q70EL1 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC20.56■□□□□ 0.88
USP54Q70EL1 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC20.56■□□□□ 0.88
USP54Q70EL1 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP54Q70EL1 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.55■□□□□ 0.88
USP54Q70EL1 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
USP54Q70EL1 TPM3P8-201ENST00000330554 643 ntBASIC20.55■□□□□ 0.88
USP54Q70EL1 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP54Q70EL1 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USP54Q70EL1 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC20.55■□□□□ 0.88
USP54Q70EL1 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP54Q70EL1 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC20.55■□□□□ 0.88
USP54Q70EL1 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP54Q70EL1 FTLP10-202ENST00000505798 471 ntBASIC20.55■□□□□ 0.88
USP54Q70EL1 AC100850.1-201ENST00000506768 649 ntBASIC20.55■□□□□ 0.88
USP54Q70EL1 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC20.55■□□□□ 0.88
USP54Q70EL1 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC20.55■□□□□ 0.88
USP54Q70EL1 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC20.55■□□□□ 0.88
USP54Q70EL1 AC097724.1-201ENST00000609581 426 ntBASIC20.55■□□□□ 0.88
USP54Q70EL1 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP54Q70EL1 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC20.55■□□□□ 0.88
USP54Q70EL1 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP54Q70EL1 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP54Q70EL1 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP54Q70EL1 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC20.55■□□□□ 0.88
USP54Q70EL1 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP54Q70EL1 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC20.55■□□□□ 0.88
USP54Q70EL1 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP54Q70EL1 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC20.55■□□□□ 0.88
USP54Q70EL1 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP54Q70EL1 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
USP54Q70EL1 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
USP54Q70EL1 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC20.54■□□□□ 0.88
USP54Q70EL1 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC20.54■□□□□ 0.88
USP54Q70EL1 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC20.54■□□□□ 0.88
USP54Q70EL1 RN7SL574P-201ENST00000581512 297 ntBASIC20.54■□□□□ 0.88
USP54Q70EL1 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms