Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 MBP-202ENST00000355994 2772 ntTSL 5 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 AC126177.1-201ENST00000547829 2218 ntBASIC19.13■□□□□ 0.65
VPS53Q5VIR6 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC19.13■□□□□ 0.65
VPS53Q5VIR6 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 DKFZP434H168-201ENST00000567381 1905 ntBASIC19.12■□□□□ 0.65
VPS53Q5VIR6 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 CENPM-206ENST00000407253 818 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 ELP6-209ENST00000446787 894 ntTSL 3 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 AC010336.2-201ENST00000564226 506 ntBASIC19.12■□□□□ 0.65
VPS53Q5VIR6 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS53Q5VIR6 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 AC022532.1-201ENST00000624563 1728 ntBASIC19.11■□□□□ 0.65
VPS53Q5VIR6 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms