Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX4Q33E94 LINC00552-201ENST00000625151 2579 ntBASIC14.82□□□□□ -0.04
RFX4Q33E94 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
RFX4Q33E94 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.82□□□□□ -0.04
RFX4Q33E94 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
RFX4Q33E94 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
RFX4Q33E94 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
RFX4Q33E94 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX4Q33E94 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.82□□□□□ -0.04
RFX4Q33E94 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX4Q33E94 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX4Q33E94 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
RFX4Q33E94 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.82□□□□□ -0.04
RFX4Q33E94 FGD5P1-202ENST00000614866 2498 ntBASIC14.82□□□□□ -0.04
RFX4Q33E94 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
RFX4Q33E94 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
RFX4Q33E94 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.81□□□□□ -0.04
RFX4Q33E94 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.81□□□□□ -0.04
RFX4Q33E94 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.81□□□□□ -0.04
RFX4Q33E94 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.81□□□□□ -0.04
RFX4Q33E94 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
RFX4Q33E94 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
RFX4Q33E94 PMS2P4-201ENST00000412466 1052 ntBASIC14.81□□□□□ -0.04
RFX4Q33E94 ATP6V0CP3-201ENST00000417255 467 ntBASIC14.81□□□□□ -0.04
RFX4Q33E94 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
RFX4Q33E94 AF186996.4-201ENST00000467186 377 ntBASIC14.81□□□□□ -0.04
RFX4Q33E94 CXCL1P1-201ENST00000502804 216 ntBASIC14.81□□□□□ -0.04
RFX4Q33E94 KRT18P56-201ENST00000507275 550 ntBASIC14.81□□□□□ -0.04
RFX4Q33E94 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC14.81□□□□□ -0.04
RFX4Q33E94 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
RFX4Q33E94 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC14.81□□□□□ -0.04
RFX4Q33E94 AL121912.1-201ENST00000603683 238 ntBASIC14.81□□□□□ -0.04
RFX4Q33E94 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
RFX4Q33E94 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
RFX4Q33E94 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC14.81□□□□□ -0.04
RFX4Q33E94 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC14.81□□□□□ -0.04
RFX4Q33E94 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
RFX4Q33E94 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
RFX4Q33E94 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RFX4Q33E94 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.81□□□□□ -0.04
RFX4Q33E94 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RFX4Q33E94 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RFX4Q33E94 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.8□□□□□ -0.04
RFX4Q33E94 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
RFX4Q33E94 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX4Q33E94 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
RFX4Q33E94 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RFX4Q33E94 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.8□□□□□ -0.04
RFX4Q33E94 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
RFX4Q33E94 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.8□□□□□ -0.04
RFX4Q33E94 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RFX4Q33E94 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX4Q33E94 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.8□□□□□ -0.04
RFX4Q33E94 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX4Q33E94 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.8□□□□□ -0.04
RFX4Q33E94 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC14.8□□□□□ -0.04
RFX4Q33E94 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX4Q33E94 KRT18P67-201ENST00000432816 1264 ntBASIC14.8□□□□□ -0.04
RFX4Q33E94 PRSS29P-201ENST00000440800 595 ntBASIC14.8□□□□□ -0.04
RFX4Q33E94 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
RFX4Q33E94 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
RFX4Q33E94 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC14.8□□□□□ -0.04
RFX4Q33E94 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC14.8□□□□□ -0.04
RFX4Q33E94 AL031432.2-201ENST00000566714 459 ntBASIC14.8□□□□□ -0.04
RFX4Q33E94 AL928711.1-201ENST00000570165 459 ntBASIC14.8□□□□□ -0.04
RFX4Q33E94 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC14.8□□□□□ -0.04
RFX4Q33E94 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC14.8□□□□□ -0.04
RFX4Q33E94 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC14.8□□□□□ -0.04
RFX4Q33E94 AL031055.1-201ENST00000606362 631 ntBASIC14.8□□□□□ -0.04
RFX4Q33E94 AL645728.2-201ENST00000641974 660 ntBASIC14.8□□□□□ -0.04
RFX4Q33E94 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RFX4Q33E94 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX4Q33E94 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RFX4Q33E94 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.8□□□□□ -0.04
RFX4Q33E94 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RFX4Q33E94 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
RFX4Q33E94 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.8□□□□□ -0.04
RFX4Q33E94 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
RFX4Q33E94 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 259.7 ms