Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
RNF4P78317 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.69□□□□□ -0.06
RNF4P78317 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.69□□□□□ -0.06
RNF4P78317 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.68□□□□□ -0.06
RNF4P78317 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.68□□□□□ -0.06
RNF4P78317 PCDHA1-201ENST00000378133 2726 ntBASIC14.68□□□□□ -0.06
RNF4P78317 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.68□□□□□ -0.06
RNF4P78317 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.68□□□□□ -0.06
RNF4P78317 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
RNF4P78317 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 AC074338.1-201ENST00000416825 156 ntBASIC14.68□□□□□ -0.06
RNF4P78317 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.68□□□□□ -0.06
RNF4P78317 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.68□□□□□ -0.06
RNF4P78317 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.68□□□□□ -0.06
RNF4P78317 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 DOC2GP-202ENST00000514950 1163 ntBASIC14.68□□□□□ -0.06
RNF4P78317 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.68□□□□□ -0.06
RNF4P78317 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.68□□□□□ -0.06
RNF4P78317 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 AC092337.1-201ENST00000568699 1129 ntBASIC14.68□□□□□ -0.06
RNF4P78317 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.68□□□□□ -0.06
RNF4P78317 LINC01115-203ENST00000606068 577 ntBASIC14.68□□□□□ -0.06
RNF4P78317 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.68□□□□□ -0.06
RNF4P78317 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.68□□□□□ -0.06
RNF4P78317 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
RNF4P78317 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
RNF4P78317 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
RNF4P78317 AL607033.1-201ENST00000623900 1599 ntBASIC14.68□□□□□ -0.06
RNF4P78317 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.68□□□□□ -0.06
RNF4P78317 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RNF4P78317 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
RNF4P78317 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.67□□□□□ -0.06
RNF4P78317 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
RNF4P78317 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
RNF4P78317 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.67□□□□□ -0.06
RNF4P78317 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.67□□□□□ -0.06
RNF4P78317 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.67□□□□□ -0.06
RNF4P78317 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.67□□□□□ -0.06
RNF4P78317 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.67□□□□□ -0.06
RNF4P78317 SPDYE19P-201ENST00000338590 713 ntBASIC14.67□□□□□ -0.06
RNF4P78317 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.67□□□□□ -0.06
RNF4P78317 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.67□□□□□ -0.06
RNF4P78317 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.67□□□□□ -0.06
RNF4P78317 GNAQP1-201ENST00000444815 1067 ntBASIC14.67□□□□□ -0.06
RNF4P78317 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.67□□□□□ -0.06
RNF4P78317 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.67□□□□□ -0.06
RNF4P78317 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
RNF4P78317 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.67□□□□□ -0.06
RNF4P78317 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
RNF4P78317 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
RNF4P78317 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.67□□□□□ -0.06
RNF4P78317 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
RNF4P78317 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNF4P78317 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
RNF4P78317 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.66□□□□□ -0.06
RNF4P78317 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.66□□□□□ -0.06
RNF4P78317 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
RNF4P78317 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
RNF4P78317 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms