Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
CDH11P55287 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDH11P55287 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CDH11P55287 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CDH11P55287 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.6□□□□□ -0.07
CDH11P55287 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.6□□□□□ -0.07
CDH11P55287 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.6□□□□□ -0.07
CDH11P55287 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.6□□□□□ -0.07
CDH11P55287 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.6□□□□□ -0.07
CDH11P55287 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CDH11P55287 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC14.6□□□□□ -0.07
CDH11P55287 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.6□□□□□ -0.07
CDH11P55287 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC14.6□□□□□ -0.07
CDH11P55287 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC14.6□□□□□ -0.07
CDH11P55287 AC027796.2-201ENST00000575326 344 ntBASIC14.6□□□□□ -0.07
CDH11P55287 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC14.6□□□□□ -0.07
CDH11P55287 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.6□□□□□ -0.07
CDH11P55287 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.6□□□□□ -0.07
CDH11P55287 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.6□□□□□ -0.07
CDH11P55287 AC138035.3-201ENST00000622706 2791 ntBASIC14.6□□□□□ -0.07
CDH11P55287 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 OR2I1P-210ENST00000642037 4691 ntBASIC14.6□□□□□ -0.07
CDH11P55287 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
CDH11P55287 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.6□□□□□ -0.07
CDH11P55287 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH11P55287 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
CDH11P55287 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.59□□□□□ -0.07
CDH11P55287 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.59□□□□□ -0.07
CDH11P55287 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.59□□□□□ -0.07
CDH11P55287 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.59□□□□□ -0.07
CDH11P55287 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.59□□□□□ -0.07
CDH11P55287 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.59□□□□□ -0.07
CDH11P55287 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CDH11P55287 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.59□□□□□ -0.07
CDH11P55287 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.59□□□□□ -0.07
CDH11P55287 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.59□□□□□ -0.07
CDH11P55287 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CDH11P55287 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC14.59□□□□□ -0.07
CDH11P55287 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CDH11P55287 AC004835.2-201ENST00000603762 682 ntBASIC14.59□□□□□ -0.07
CDH11P55287 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.59□□□□□ -0.07
CDH11P55287 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC14.59□□□□□ -0.07
CDH11P55287 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.59□□□□□ -0.07
CDH11P55287 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CDH11P55287 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.59□□□□□ -0.07
CDH11P55287 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.59□□□□□ -0.07
CDH11P55287 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH11P55287 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
CDH11P55287 OR2I1P-209ENST00000641730 5365 ntBASIC14.59□□□□□ -0.07
CDH11P55287 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.59□□□□□ -0.07
CDH11P55287 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.58□□□□□ -0.07
CDH11P55287 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.58□□□□□ -0.07
CDH11P55287 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.07
CDH11P55287 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CDH11P55287 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CDH11P55287 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CDH11P55287 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.58□□□□□ -0.08
CDH11P55287 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDH11P55287 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CDH11P55287 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms