Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A4P53420 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.62■□□□□ 0.25
COL4A4P53420 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.62■□□□□ 0.25
COL4A4P53420 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
COL4A4P53420 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A4P53420 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A4P53420 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A4P53420 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A4P53420 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
COL4A4P53420 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.62■□□□□ 0.25
COL4A4P53420 RPL17P11-201ENST00000417593 544 ntBASIC16.62■□□□□ 0.25
COL4A4P53420 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A4P53420 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A4P53420 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A4P53420 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A4P53420 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A4P53420 FADS2-212ENST00000522639 360 ntTSL 5 BASIC16.62■□□□□ 0.25
COL4A4P53420 FADS2-215ENST00000574708 385 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A4P53420 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A4P53420 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A4P53420 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC16.62■□□□□ 0.25
COL4A4P53420 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A4P53420 AC006453.4-201ENST00000636949 1252 ntBASIC16.62■□□□□ 0.25
COL4A4P53420 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
COL4A4P53420 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 AL023775.1-201ENST00000454907 1746 ntBASIC16.61■□□□□ 0.25
COL4A4P53420 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A4P53420 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC16.61■□□□□ 0.25
COL4A4P53420 AC092978.1-202ENST00000637590 1327 ntBASIC16.61■□□□□ 0.25
COL4A4P53420 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A4P53420 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A4P53420 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A4P53420 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A4P53420 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
COL4A4P53420 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A4P53420 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A4P53420 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC16.61■□□□□ 0.25
COL4A4P53420 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A4P53420 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.61■□□□□ 0.25
COL4A4P53420 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
COL4A4P53420 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC16.61■□□□□ 0.25
COL4A4P53420 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC16.61■□□□□ 0.25
COL4A4P53420 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.61■□□□□ 0.25
COL4A4P53420 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A4P53420 SPTLC1P5-201ENST00000450718 252 ntBASIC16.61■□□□□ 0.25
COL4A4P53420 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A4P53420 SERPINA13P-202ENST00000478994 924 ntBASIC16.61■□□□□ 0.25
COL4A4P53420 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC16.61■□□□□ 0.25
COL4A4P53420 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A4P53420 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.61■□□□□ 0.25
COL4A4P53420 AC104982.3-201ENST00000581995 514 ntBASIC16.61■□□□□ 0.25
COL4A4P53420 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A4P53420 AL450472.2-201ENST00000603663 1156 ntBASIC16.61■□□□□ 0.25
COL4A4P53420 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A4P53420 AP003419.4-201ENST00000616071 517 ntBASIC16.61■□□□□ 0.25
COL4A4P53420 AC244452.3-201ENST00000636814 210 ntBASIC16.61■□□□□ 0.25
COL4A4P53420 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A4P53420 PCDH8P1-201ENST00000428983 2773 ntBASIC16.61■□□□□ 0.25
COL4A4P53420 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.61■□□□□ 0.25
COL4A4P53420 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A4P53420 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A4P53420 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL4A4P53420 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A4P53420 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A4P53420 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A4P53420 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A4P53420 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A4P53420 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
COL4A4P53420 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A4P53420 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A4P53420 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A4P53420 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A4P53420 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A4P53420 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A4P53420 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.6■□□□□ 0.25
COL4A4P53420 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
COL4A4P53420 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A4P53420 KRTAP19-9P-201ENST00000421795 191 ntBASIC16.6■□□□□ 0.25
COL4A4P53420 AC016700.1-201ENST00000429424 312 ntBASIC16.6■□□□□ 0.25
COL4A4P53420 FTLP1-201ENST00000449155 526 ntBASIC16.6■□□□□ 0.25
COL4A4P53420 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A4P53420 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A4P53420 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A4P53420 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A4P53420 AC018635.2-201ENST00000608625 364 ntBASIC16.6■□□□□ 0.25
COL4A4P53420 AC091544.8-201ENST00000619490 361 ntBASIC16.6■□□□□ 0.25
COL4A4P53420 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC16.6■□□□□ 0.25
COL4A4P53420 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A4P53420 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
COL4A4P53420 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
COL4A4P53420 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A4P53420 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms