Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.77■□□□□ 0.28
LIG3P49916 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIG3P49916 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.77■□□□□ 0.28
LIG3P49916 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIG3P49916 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.77■□□□□ 0.28
LIG3P49916 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
LIG3P49916 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.77■□□□□ 0.28
LIG3P49916 SNHG9-202ENST00000564014 471 ntBASIC16.77■□□□□ 0.28
LIG3P49916 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.77■□□□□ 0.28
LIG3P49916 AL009183.1-201ENST00000603760 355 ntBASIC16.77■□□□□ 0.28
LIG3P49916 AC099522.2-201ENST00000607001 744 ntBASIC16.77■□□□□ 0.28
LIG3P49916 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
LIG3P49916 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIG3P49916 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIG3P49916 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
LIG3P49916 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.77■□□□□ 0.27
LIG3P49916 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
LIG3P49916 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
LIG3P49916 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
LIG3P49916 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
LIG3P49916 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.77■□□□□ 0.27
LIG3P49916 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC16.77■□□□□ 0.27
LIG3P49916 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC16.77■□□□□ 0.27
LIG3P49916 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
LIG3P49916 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LIG3P49916 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.76■□□□□ 0.27
LIG3P49916 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
LIG3P49916 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.76■□□□□ 0.27
LIG3P49916 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.76■□□□□ 0.27
LIG3P49916 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.76■□□□□ 0.27
LIG3P49916 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC16.76■□□□□ 0.27
LIG3P49916 RNU1-129P-201ENST00000384064 167 ntBASIC16.76■□□□□ 0.27
LIG3P49916 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.76■□□□□ 0.27
LIG3P49916 AC254562.1-201ENST00000417586 456 ntBASIC16.76■□□□□ 0.27
LIG3P49916 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.76■□□□□ 0.27
LIG3P49916 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.76■□□□□ 0.27
LIG3P49916 AC092183.1-201ENST00000469884 875 ntBASIC16.76■□□□□ 0.27
LIG3P49916 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.76■□□□□ 0.27
LIG3P49916 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.76■□□□□ 0.27
LIG3P49916 U1.21-201ENST00000580816 167 ntBASIC16.76■□□□□ 0.27
LIG3P49916 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
LIG3P49916 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.76■□□□□ 0.27
LIG3P49916 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
LIG3P49916 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
LIG3P49916 OR2I1P-210ENST00000642037 4691 ntBASIC16.76■□□□□ 0.27
LIG3P49916 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.76■□□□□ 0.27
LIG3P49916 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
LIG3P49916 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIG3P49916 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LIG3P49916 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LIG3P49916 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIG3P49916 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIG3P49916 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIG3P49916 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIG3P49916 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIG3P49916 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIG3P49916 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LIG3P49916 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.75■□□□□ 0.27
LIG3P49916 AL671277.1-201ENST00000429656 993 ntBASIC16.75■□□□□ 0.27
LIG3P49916 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.75■□□□□ 0.27
LIG3P49916 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.75■□□□□ 0.27
LIG3P49916 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.75■□□□□ 0.27
LIG3P49916 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.75■□□□□ 0.27
LIG3P49916 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.75■□□□□ 0.27
LIG3P49916 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.75■□□□□ 0.27
LIG3P49916 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.75■□□□□ 0.27
LIG3P49916 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.75■□□□□ 0.27
LIG3P49916 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.75■□□□□ 0.27
LIG3P49916 AL031055.1-201ENST00000606362 631 ntBASIC16.75■□□□□ 0.27
LIG3P49916 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.75■□□□□ 0.27
LIG3P49916 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIG3P49916 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC16.75■□□□□ 0.27
LIG3P49916 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
LIG3P49916 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.75■□□□□ 0.27
LIG3P49916 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.75■□□□□ 0.27
LIG3P49916 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.75■□□□□ 0.27
LIG3P49916 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIG3P49916 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIG3P49916 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC16.75■□□□□ 0.27
LIG3P49916 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
LIG3P49916 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIG3P49916 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIG3P49916 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms