Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXD3P31249 AC063926.3-201ENST00000624734 5658 ntBASIC12.3□□□□□ -0.44
HOXD3P31249 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
HOXD3P31249 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXD3P31249 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
HOXD3P31249 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC12.3□□□□□ -0.44
HOXD3P31249 BNIP3P1-202ENST00000550043 1585 ntBASIC12.3□□□□□ -0.44
HOXD3P31249 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXD3P31249 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXD3P31249 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
HOXD3P31249 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC12.29□□□□□ -0.44
HOXD3P31249 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC12.29□□□□□ -0.44
HOXD3P31249 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 KRT8P37-201ENST00000451609 1420 ntBASIC12.29□□□□□ -0.44
HOXD3P31249 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
HOXD3P31249 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC12.29□□□□□ -0.44
HOXD3P31249 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC12.29□□□□□ -0.44
HOXD3P31249 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC12.29□□□□□ -0.44
HOXD3P31249 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC12.29□□□□□ -0.44
HOXD3P31249 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
HOXD3P31249 AC087499.6-201ENST00000411576 835 ntBASIC12.29□□□□□ -0.44
HOXD3P31249 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC12.29□□□□□ -0.44
HOXD3P31249 HLA-V-201ENST00000429037 534 ntBASIC12.29□□□□□ -0.44
HOXD3P31249 DFFBP1-201ENST00000433250 979 ntBASIC12.29□□□□□ -0.44
HOXD3P31249 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC12.29□□□□□ -0.44
HOXD3P31249 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC12.29□□□□□ -0.44
HOXD3P31249 RAB35-202ENST00000534951 939 ntTSL 2 BASIC12.29□□□□□ -0.44
HOXD3P31249 AC010336.2-201ENST00000564226 506 ntBASIC12.29□□□□□ -0.44
HOXD3P31249 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC12.29□□□□□ -0.44
HOXD3P31249 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC12.29□□□□□ -0.44
HOXD3P31249 CHCHD2P3-201ENST00000603038 451 ntBASIC12.29□□□□□ -0.44
HOXD3P31249 AC007431.3-201ENST00000623221 587 ntBASIC12.29□□□□□ -0.44
HOXD3P31249 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
HOXD3P31249 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC12.29□□□□□ -0.44
HOXD3P31249 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC12.29□□□□□ -0.44
HOXD3P31249 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
HOXD3P31249 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
HOXD3P31249 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC12.29□□□□□ -0.44
HOXD3P31249 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC12.29□□□□□ -0.44
HOXD3P31249 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXD3P31249 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXD3P31249 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HOXD3P31249 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXD3P31249 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXD3P31249 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC12.28□□□□□ -0.44
HOXD3P31249 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC12.28□□□□□ -0.44
HOXD3P31249 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC12.28□□□□□ -0.44
HOXD3P31249 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXD3P31249 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXD3P31249 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC12.28□□□□□ -0.44
HOXD3P31249 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HOXD3P31249 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC12.28□□□□□ -0.44
HOXD3P31249 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXD3P31249 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC12.28□□□□□ -0.44
HOXD3P31249 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC12.28□□□□□ -0.44
HOXD3P31249 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
HOXD3P31249 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC12.28□□□□□ -0.44
HOXD3P31249 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HOXD3P31249 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HOXD3P31249 FRMD6-AS1-201ENST00000617151 2229 ntBASIC12.28□□□□□ -0.44
HOXD3P31249 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
HOXD3P31249 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXD3P31249 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXD3P31249 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
HOXD3P31249 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
HOXD3P31249 FO393414.2-201ENST00000405153 598 ntBASIC12.28□□□□□ -0.44
HOXD3P31249 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC12.28□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms