Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RXRBP28702 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RXRBP28702 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC20.25■□□□□ 0.83
RXRBP28702 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RXRBP28702 AL627422.1-201ENST00000434104 580 ntBASIC20.25■□□□□ 0.83
RXRBP28702 RN7SL396P-201ENST00000471086 295 ntBASIC20.25■□□□□ 0.83
RXRBP28702 HLA-J-204ENST00000495278 958 ntBASIC20.25■□□□□ 0.83
RXRBP28702 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RXRBP28702 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC20.25■□□□□ 0.83
RXRBP28702 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC20.25■□□□□ 0.83
RXRBP28702 MIR4472-1-201ENST00000584349 80 ntBASIC20.25■□□□□ 0.83
RXRBP28702 AC138466.5-201ENST00000624002 808 ntBASIC20.25■□□□□ 0.83
RXRBP28702 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC20.25■□□□□ 0.83
RXRBP28702 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RXRBP28702 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
RXRBP28702 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
RXRBP28702 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
RXRBP28702 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.24■□□□□ 0.83
RXRBP28702 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RXRBP28702 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.24■□□□□ 0.83
RXRBP28702 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RXRBP28702 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.24■□□□□ 0.83
RXRBP28702 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RXRBP28702 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RXRBP28702 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RXRBP28702 COX20P1-201ENST00000366529 357 ntBASIC20.24■□□□□ 0.83
RXRBP28702 AL357563.1-201ENST00000404728 395 ntBASIC20.24■□□□□ 0.83
RXRBP28702 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC20.24■□□□□ 0.83
RXRBP28702 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC20.24■□□□□ 0.83
RXRBP28702 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC20.24■□□□□ 0.83
RXRBP28702 AC004837.1-201ENST00000446267 564 ntBASIC20.24■□□□□ 0.83
RXRBP28702 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC20.24■□□□□ 0.83
RXRBP28702 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC20.24■□□□□ 0.83
RXRBP28702 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
RXRBP28702 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC20.24■□□□□ 0.83
RXRBP28702 GPR39-203ENST00000622084 900 ntTSL 5 BASIC20.24■□□□□ 0.83
RXRBP28702 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
RXRBP28702 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RXRBP28702 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RXRBP28702 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RXRBP28702 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC20.24■□□□□ 0.83
RXRBP28702 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RXRBP28702 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
RXRBP28702 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RXRBP28702 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC20.24■□□□□ 0.83
RXRBP28702 AC004554.1-201ENST00000422830 1468 ntBASIC20.24■□□□□ 0.83
RXRBP28702 AP001282.1-201ENST00000531301 1499 ntBASIC20.24■□□□□ 0.83
RXRBP28702 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.23■□□□□ 0.83
RXRBP28702 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RXRBP28702 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RXRBP28702 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RXRBP28702 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.23■□□□□ 0.83
RXRBP28702 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RXRBP28702 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
RXRBP28702 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RXRBP28702 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RXRBP28702 GCSHP3-201ENST00000431120 391 ntBASIC20.23■□□□□ 0.83
RXRBP28702 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC20.23■□□□□ 0.83
RXRBP28702 FAM86B3P-203ENST00000523992 854 ntBASIC20.23■□□□□ 0.83
RXRBP28702 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC20.23■□□□□ 0.83
RXRBP28702 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC20.23■□□□□ 0.83
RXRBP28702 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RXRBP28702 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC20.23■□□□□ 0.83
RXRBP28702 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC20.23■□□□□ 0.83
RXRBP28702 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC20.23■□□□□ 0.83
RXRBP28702 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RXRBP28702 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RXRBP28702 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC20.22■□□□□ 0.83
RXRBP28702 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.22■□□□□ 0.83
RXRBP28702 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.22■□□□□ 0.83
RXRBP28702 AMT-206ENST00000458307 1860 ntTSL 2 BASIC20.22■□□□□ 0.83
RXRBP28702 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RXRBP28702 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RXRBP28702 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RXRBP28702 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.22■□□□□ 0.83
RXRBP28702 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC20.22■□□□□ 0.83
RXRBP28702 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
RXRBP28702 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RXRBP28702 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RXRBP28702 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RXRBP28702 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RXRBP28702 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RXRBP28702 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RXRBP28702 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RXRBP28702 SNX15-201ENST00000352068 771 ntTSL 5 BASIC20.22■□□□□ 0.83
RXRBP28702 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RXRBP28702 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RXRBP28702 HIST2H2BA-201ENST00000412169 381 ntBASIC20.22■□□□□ 0.83
RXRBP28702 AC004522.1-201ENST00000419978 654 ntBASIC20.22■□□□□ 0.83
RXRBP28702 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RXRBP28702 EIF3FP3-201ENST00000434851 1086 ntBASIC20.22■□□□□ 0.83
RXRBP28702 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC20.22■□□□□ 0.83
RXRBP28702 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC20.22■□□□□ 0.83
RXRBP28702 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC20.22■□□□□ 0.83
RXRBP28702 AL627230.2-201ENST00000613254 655 ntBASIC20.22■□□□□ 0.83
RXRBP28702 AC005618.3-201ENST00000624928 458 ntBASIC20.22■□□□□ 0.83
RXRBP28702 AC134407.2-201ENST00000625089 1978 ntBASIC20.22■□□□□ 0.83
RXRBP28702 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC20.22■□□□□ 0.83
RXRBP28702 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
RXRBP28702 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms