Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC13.82□□□□□ -0.2
COL8A1P27658 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
COL8A1P27658 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC13.82□□□□□ -0.2
COL8A1P27658 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
COL8A1P27658 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC13.82□□□□□ -0.2
COL8A1P27658 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 KRTAP19-9P-201ENST00000421795 191 ntBASIC13.82□□□□□ -0.2
COL8A1P27658 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC13.82□□□□□ -0.2
COL8A1P27658 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC13.82□□□□□ -0.2
COL8A1P27658 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.82□□□□□ -0.2
COL8A1P27658 MTX1P1-201ENST00000440904 838 ntBASIC13.82□□□□□ -0.2
COL8A1P27658 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC13.82□□□□□ -0.2
COL8A1P27658 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC13.82□□□□□ -0.2
COL8A1P27658 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC13.82□□□□□ -0.2
COL8A1P27658 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC13.82□□□□□ -0.2
COL8A1P27658 AC078819.1-201ENST00000547454 765 ntBASIC13.82□□□□□ -0.2
COL8A1P27658 AC012085.1-201ENST00000548270 765 ntBASIC13.82□□□□□ -0.2
COL8A1P27658 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC13.82□□□□□ -0.2
COL8A1P27658 AP001063.1-201ENST00000568332 529 ntBASIC13.82□□□□□ -0.2
COL8A1P27658 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC13.82□□□□□ -0.2
COL8A1P27658 MIR3619-201ENST00000579667 83 ntBASIC13.82□□□□□ -0.2
COL8A1P27658 MIR4750-201ENST00000584564 56 ntBASIC13.82□□□□□ -0.2
COL8A1P27658 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
COL8A1P27658 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.82□□□□□ -0.2
COL8A1P27658 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
COL8A1P27658 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
COL8A1P27658 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC13.82□□□□□ -0.2
COL8A1P27658 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC13.82□□□□□ -0.2
COL8A1P27658 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
COL8A1P27658 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.82□□□□□ -0.2
COL8A1P27658 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.81□□□□□ -0.2
COL8A1P27658 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC13.81□□□□□ -0.2
COL8A1P27658 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
COL8A1P27658 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC13.81□□□□□ -0.2
COL8A1P27658 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC13.81□□□□□ -0.2
COL8A1P27658 AC018735.1-201ENST00000437208 1502 ntBASIC13.81□□□□□ -0.2
COL8A1P27658 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
COL8A1P27658 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.81□□□□□ -0.2
COL8A1P27658 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
COL8A1P27658 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
COL8A1P27658 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
COL8A1P27658 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
COL8A1P27658 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.81□□□□□ -0.2
COL8A1P27658 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
COL8A1P27658 CYP46A4P-201ENST00000414953 267 ntBASIC13.81□□□□□ -0.2
COL8A1P27658 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.81□□□□□ -0.2
COL8A1P27658 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 FAM197Y7-201ENST00000432892 766 ntBASIC13.81□□□□□ -0.2
COL8A1P27658 RPL13P2-201ENST00000440687 659 ntBASIC13.81□□□□□ -0.2
COL8A1P27658 AC114501.1-201ENST00000445949 172 ntBASIC13.81□□□□□ -0.2
COL8A1P27658 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.81□□□□□ -0.2
COL8A1P27658 HOMER2P2-201ENST00000451621 847 ntBASIC13.81□□□□□ -0.2
COL8A1P27658 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC13.81□□□□□ -0.2
COL8A1P27658 RPSAP36-202ENST00000494591 1261 ntBASIC13.81□□□□□ -0.2
COL8A1P27658 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.81□□□□□ -0.2
COL8A1P27658 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC13.81□□□□□ -0.2
COL8A1P27658 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC13.81□□□□□ -0.2
COL8A1P27658 PAM16-215ENST00000577031 548 ntTSL 4 BASIC13.81□□□□□ -0.2
COL8A1P27658 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.81□□□□□ -0.2
COL8A1P27658 NDUFV2P1-201ENST00000596415 907 ntBASIC13.81□□□□□ -0.2
COL8A1P27658 AL096828.3-201ENST00000615354 462 ntBASIC13.81□□□□□ -0.2
COL8A1P27658 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.81□□□□□ -0.2
COL8A1P27658 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 AC141586.5-201ENST00000624546 2050 ntBASIC13.81□□□□□ -0.2
COL8A1P27658 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC13.81□□□□□ -0.2
COL8A1P27658 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL8A1P27658 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms