Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
COL9A1P20849 AL691432.1-201ENST00000596308 1422 ntBASIC16.17■□□□□ 0.18
COL9A1P20849 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.17■□□□□ 0.18
COL9A1P20849 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
COL9A1P20849 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL9A1P20849 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
COL9A1P20849 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
COL9A1P20849 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.16■□□□□ 0.18
COL9A1P20849 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.16■□□□□ 0.18
COL9A1P20849 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
COL9A1P20849 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.16■□□□□ 0.18
COL9A1P20849 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC16.16■□□□□ 0.18
COL9A1P20849 AL357373.1-201ENST00000394974 322 ntBASIC16.16■□□□□ 0.18
COL9A1P20849 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC16.16■□□□□ 0.18
COL9A1P20849 AC134915.1-201ENST00000426461 574 ntBASIC16.16■□□□□ 0.18
COL9A1P20849 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.16■□□□□ 0.18
COL9A1P20849 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.16■□□□□ 0.18
COL9A1P20849 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 AC044849.1-201ENST00000519737 1188 ntBASIC16.16■□□□□ 0.18
COL9A1P20849 GNRHR2-203ENST00000581100 1187 ntBASIC16.16■□□□□ 0.18
COL9A1P20849 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
COL9A1P20849 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
COL9A1P20849 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 TUBBP5-203ENST00000508529 1334 ntBASIC16.16■□□□□ 0.18
COL9A1P20849 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.16■□□□□ 0.18
COL9A1P20849 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
COL9A1P20849 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 Z97205.2-201ENST00000564697 1639 ntBASIC16.16■□□□□ 0.18
COL9A1P20849 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.16■□□□□ 0.18
COL9A1P20849 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL9A1P20849 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.16■□□□□ 0.18
COL9A1P20849 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.15■□□□□ 0.18
COL9A1P20849 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
COL9A1P20849 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.15■□□□□ 0.18
COL9A1P20849 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 LRRIQ3-202ENST00000370909 793 ntTSL 5 BASIC16.15■□□□□ 0.18
COL9A1P20849 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC16.15■□□□□ 0.18
COL9A1P20849 DNAJB1P1-201ENST00000429417 1024 ntBASIC16.15■□□□□ 0.18
COL9A1P20849 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC16.15■□□□□ 0.18
COL9A1P20849 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
COL9A1P20849 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC16.15■□□□□ 0.18
COL9A1P20849 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
COL9A1P20849 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.15■□□□□ 0.18
COL9A1P20849 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.15■□□□□ 0.18
COL9A1P20849 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.15■□□□□ 0.18
COL9A1P20849 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.15■□□□□ 0.18
COL9A1P20849 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.15■□□□□ 0.18
COL9A1P20849 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.15■□□□□ 0.18
COL9A1P20849 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.15■□□□□ 0.18
COL9A1P20849 FO393412.1-201ENST00000619841 382 ntBASIC16.15■□□□□ 0.18
COL9A1P20849 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC16.15■□□□□ 0.18
COL9A1P20849 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.15■□□□□ 0.18
COL9A1P20849 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
COL9A1P20849 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL9A1P20849 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.14■□□□□ 0.18
COL9A1P20849 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
COL9A1P20849 AL592424.1-201ENST00000563624 1536 ntBASIC16.14■□□□□ 0.18
COL9A1P20849 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL9A1P20849 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL9A1P20849 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL9A1P20849 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL9A1P20849 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL9A1P20849 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL9A1P20849 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL9A1P20849 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL9A1P20849 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL9A1P20849 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms