Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 ARMC8-215ENST00000471453 2910 ntTSL 2 BASIC9.19□□□□□ -0.946e-6■■■■■ 103.4
SF3B1O75533 PPP2R3C-220ENST00000557773 988 ntTSL 29.17□□□□□ -0.946e-6■■■■■ 103.4
SF3B1O75533 COPS5-213ENST00000523890 1086 ntTSL 39.15□□□□□ -0.941e-8■■■■■ 103.4
SF3B1O75533 ZNF143-204ENST00000396604 2696 ntAPPRIS ALT1 TSL 5 BASIC9.1□□□□□ -0.956e-6■■■■■ 103.4
SF3B1O75533 THOC5-209ENST00000442555 3012 ntTSL 29.07□□□□□ -0.966e-6■■■■■ 103.4
SF3B1O75533 TSC2-223ENST00000568566 542 ntTSL 39.06□□□□□ -0.961e-8■■■■■ 103.4
SF3B1O75533 CHORDC1-203ENST00000525317 1136 ntTSL 59.04□□□□□ -0.961e-10■■■■■ 103.4
SF3B1O75533 TRAPPC3-206ENST00000469757 221 ntTSL 29.04□□□□□ -0.966e-6■■■■■ 103.4
SF3B1O75533 MPDU1-218ENST00000579445 582 ntTSL 38.97□□□□□ -0.971e-8■■■■■ 103.4
SF3B1O75533 VPS13B-210ENST00000521932 1055 ntTSL 38.96□□□□□ -0.986e-6■■■■■ 103.4
SF3B1O75533 MPDU1-221ENST00000581380 456 ntTSL 38.95□□□□□ -0.981e-8■■■■■ 103.4
SF3B1O75533 MPDU1-214ENST00000576066 491 ntTSL 38.95□□□□□ -0.981e-8■■■■■ 103.4
SF3B1O75533 FTX-203ENST00000429124 2597 ntTSL 28.94□□□□□ -0.981e-8■■■■■ 103.4
SF3B1O75533 MPDU1-219ENST00000580708 563 ntTSL 58.81□□□□□ -11e-8■■■■■ 103.4
SF3B1O75533 FBXL2-218ENST00000493778 648 ntTSL 48.79□□□□□ -16e-6■■■■■ 103.4
SF3B1O75533 PHYKPL-215ENST00000510913 643 ntTSL 38.78□□□□□ -11e-8■■■■■ 103.4
SF3B1O75533 NAA16-203ENST00000463114 837 ntTSL 58.78□□□□□ -11e-8■■■■■ 103.4
SF3B1O75533 MPDU1-225ENST00000584479 572 ntTSL 28.75□□□□□ -1.011e-8■■■■■ 103.4
SF3B1O75533 MPDU1-209ENST00000572719 917 ntTSL 58.75□□□□□ -1.011e-8■■■■■ 103.4
SF3B1O75533 THRB-209ENST00000431815 568 ntTSL 1 (best)8.74□□□□□ -1.019e-9■■■■■ 103.4
SF3B1O75533 FAM193B-206ENST00000506432 426 ntTSL 28.73□□□□□ -1.014e-19■■■■■ 103.4
SF3B1O75533 TRPS1-209ENST00000519674 3116 ntTSL 1 (best) BASIC8.7□□□□□ -1.023e-6■■■■■ 103.4
SF3B1O75533 FAM126B-211ENST00000498780 2209 ntTSL 28.69□□□□□ -1.026e-6■■■■■ 103.4
SF3B1O75533 ASH2L-205ENST00000518186 575 ntTSL 48.69□□□□□ -1.021e-8■■■■■ 103.4
SF3B1O75533 ZNF268-206ENST00000536899 3236 ntTSL 1 (best) BASIC8.69□□□□□ -1.026e-6■■■■■ 103.4
SF3B1O75533 EP300-209ENST00000635552 1952 nt8.62□□□□□ -1.036e-6■■■■■ 103.4
SF3B1O75533 REXO5-216ENST00000568476 574 ntTSL 48.62□□□□□ -1.031e-8■■■■■ 103.4
SF3B1O75533 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC8.6□□□□□ -1.031e-8■■■■■ 103.4
SF3B1O75533 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC8.6□□□□□ -1.031e-8■■■■■ 103.4
SF3B1O75533 NAA20-205ENST00000480550 1000 ntTSL 58.56□□□□□ -1.041e-8■■■■■ 103.4
SF3B1O75533 MPDU1-215ENST00000576272 809 ntTSL 28.55□□□□□ -1.041e-8■■■■■ 103.4
SF3B1O75533 MPDU1-220ENST00000580834 714 ntTSL 58.55□□□□□ -1.041e-8■■■■■ 103.4
SF3B1O75533 THOC5-216ENST00000490103 4753 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.046e-6■■■■■ 103.4
SF3B1O75533 NAA16-210ENST00000497143 2903 ntTSL 58.51□□□□□ -1.051e-8■■■■■ 103.4
SF3B1O75533 ATP5G2-205ENST00000549748 728 ntTSL 2 BASIC8.48□□□□□ -1.056e-6■■■■■ 103.4
SF3B1O75533 FBXL2-204ENST00000425973 511 ntTSL 48.41□□□□□ -1.066e-6■■■■■ 103.4
SF3B1O75533 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC8.39□□□□□ -1.076e-6■■■■■ 103.4
SF3B1O75533 C7orf49-204ENST00000459937 2576 ntTSL 1 (best)8.35□□□□□ -1.076e-6■■■■■ 103.4
SF3B1O75533 NAA20-204ENST00000463154 1036 ntTSL 38.33□□□□□ -1.081e-8■■■■■ 103.4
SF3B1O75533 TMEM120A-206ENST00000465494 509 ntTSL 38.33□□□□□ -1.086e-6■■■■■ 103.4
SF3B1O75533 RASSF5-209ENST00000636182 3427 ntTSL 5 BASIC8.32□□□□□ -1.086e-6■■■■■ 103.4
SF3B1O75533 PPP2R5C-218ENST00000556260 2013 ntTSL 3 BASIC8.27□□□□□ -1.091e-8■■■■■ 103.4
SF3B1O75533 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.096e-6■■■■■ 103.4
SF3B1O75533 NAA60-225ENST00000574380 578 ntTSL 48.25□□□□□ -1.096e-6■■■■■ 103.4
SF3B1O75533 CASS4-203ENST00000497244 2871 ntTSL 1 (best)8.24□□□□□ -1.098e-7■■■■■ 103.4
SF3B1O75533 ZNF268-213ENST00000542986 3773 ntTSL 5 BASIC8.23□□□□□ -1.096e-6■■■■■ 103.4
SF3B1O75533 REV1-215ENST00000486117 582 ntTSL 28.22□□□□□ -1.096e-6■■■■■ 103.4
SF3B1O75533 THOC5-214ENST00000484924 909 ntTSL 58.22□□□□□ -1.096e-6■■■■■ 103.4
SF3B1O75533 AC016831.1-202ENST00000447307 726 ntTSL 38.2□□□□□ -1.16e-6■■■■■ 103.4
SF3B1O75533 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC8.17□□□□□ -1.16e-6■■■■■ 103.4
SF3B1O75533 EFCAB2-216ENST00000551317 520 ntTSL 38.15□□□□□ -1.16e-6■■■■■ 103.4
SF3B1O75533 PDCD6-205ENST00000507473 486 ntTSL 38.1□□□□□ -1.112e-6■■■■■ 103.4
SF3B1O75533 S100PBP-216ENST00000531256 551 ntTSL 48.08□□□□□ -1.126e-6■■■■■ 103.4
SF3B1O75533 ATF7IP-216ENST00000541654 2688 ntTSL 28.05□□□□□ -1.126e-6■■■■■ 103.4
SF3B1O75533 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC8.02□□□□□ -1.139e-9■■■■■ 103.4
SF3B1O75533 ZNF519-202ENST00000587419 2114 ntTSL 27.99□□□□□ -1.131e-8■■■■■ 103.4
SF3B1O75533 KNTC1-206ENST00000534995 1065 ntTSL 2 BASIC7.98□□□□□ -1.131e-8■■■■■ 103.4
SF3B1O75533 ILF2-204ENST00000480213 1008 ntTSL 57.95□□□□□ -1.141e-8■■■■■ 103.4
SF3B1O75533 SNX29-201ENST00000562510 536 ntTSL 37.89□□□□□ -1.151e-8■■■■■ 103.4
SF3B1O75533 FBXL2-212ENST00000464164 527 ntTSL 47.89□□□□□ -1.156e-6■■■■■ 103.4
SF3B1O75533 FTX-204ENST00000430772 708 ntTSL 57.88□□□□□ -1.151e-8■■■■■ 103.4
SF3B1O75533 RRM1-210ENST00000532170 3166 ntTSL 27.88□□□□□ -1.156e-6■■■■■ 103.4
SF3B1O75533 RIC8A-214ENST00000531541 376 ntTSL 37.87□□□□□ -1.151e-8■■■■■ 103.4
SF3B1O75533 AQR-202ENST00000543879 5722 ntTSL 27.84□□□□□ -1.156e-6■■■■■ 103.4
SF3B1O75533 CHORDC1-209ENST00000533724 5361 ntTSL 27.84□□□□□ -1.151e-10■■■■■ 103.4
SF3B1O75533 NTAN1-204ENST00000566419 738 ntTSL 37.83□□□□□ -1.166e-6■■■■■ 103.4
SF3B1O75533 RIC8A-202ENST00000524854 649 ntTSL 37.81□□□□□ -1.161e-8■■■■■ 103.4
SF3B1O75533 REXO5-207ENST00000564200 715 ntTSL 37.78□□□□□ -1.161e-8■■■■■ 103.4
SF3B1O75533 ANK3-214ENST00000489505 2268 ntTSL 27.73□□□□□ -1.176e-6■■■■■ 103.4
SF3B1O75533 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC7.69□□□□□ -1.182e-7■■■■■ 103.4
SF3B1O75533 GTF2H3-212ENST00000543341 3329 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.181e-8■■■■■ 103.4
SF3B1O75533 NTAN1-205ENST00000566542 2398 ntTSL 27.65□□□□□ -1.196e-6■■■■■ 103.4
SF3B1O75533 NAA60-216ENST00000572757 818 ntTSL 27.61□□□□□ -1.196e-6■■■■■ 103.4
SF3B1O75533 USP48-206ENST00000464577 2089 ntTSL 27.58□□□□□ -1.21e-8■■■■■ 103.4
SF3B1O75533 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC7.53□□□□□ -1.26e-6■■■■■ 103.4
SF3B1O75533 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.21e-8■■■■■ 103.4
SF3B1O75533 DCAF6-210ENST00000478668 494 ntTSL 27.52□□□□□ -1.26e-6■■■■■ 103.4
SF3B1O75533 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC7.51□□□□□ -1.211e-8■■■■■ 103.4
SF3B1O75533 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC7.44□□□□□ -1.226e-6■■■■■ 103.4
SF3B1O75533 TACC1-213ENST00000521154 560 ntTSL 27.43□□□□□ -1.221e-8■■■■■ 103.4
SF3B1O75533 PPP3CA-204ENST00000492351 836 ntTSL 57.43□□□□□ -1.226e-6■■■■■ 103.4
SF3B1O75533 AGK-207ENST00000494688 951 ntTSL 57.4□□□□□ -1.221e-8■■■■■ 103.4
SF3B1O75533 ASB16-AS1-202ENST00000588785 574 ntTSL 37.39□□□□□ -1.231e-8■■■■■ 103.4
SF3B1O75533 KIF13B-205ENST00000523968 1750 ntTSL 57.37□□□□□ -1.236e-6■■■■■ 103.4
SF3B1O75533 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC7.3□□□□□ -1.246e-6■■■■■ 103.4
SF3B1O75533 TACC1-220ENST00000522544 372 ntTSL 57.27□□□□□ -1.241e-8■■■■■ 103.4
SF3B1O75533 NAA60-232ENST00000575936 547 ntTSL 47.27□□□□□ -1.256e-6■■■■■ 103.4
SF3B1O75533 RPL31-202ENST00000409000 641 ntTSL 2 BASIC7.25□□□□□ -1.251e-8■■■■■ 103.4
SF3B1O75533 CHSY1-206ENST00000561414 564 ntTSL 47.25□□□□□ -1.256e-6■■■■■ 103.4
SF3B1O75533 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.252e-7■■■■■ 103.4
SF3B1O75533 C7orf49-212ENST00000488161 124 ntTSL 37.21□□□□□ -1.266e-6■■■■■ 103.4
SF3B1O75533 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.266e-6■■■■■ 103.4
SF3B1O75533 EFCAB11-205ENST00000554761 936 ntTSL 27.2□□□□□ -1.261e-8■■■■■ 103.4
SF3B1O75533 PNP-203ENST00000553591 770 ntTSL 57.19□□□□□ -1.261e-8■■■■■ 103.4
SF3B1O75533 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.261e-10■■■■■ 103.4
SF3B1O75533 SLC25A25-208ENST00000472769 676 ntTSL 37.17□□□□□ -1.266e-6■■■■■ 103.4
SF3B1O75533 THRB-205ENST00000415021 671 ntTSL 1 (best)7.12□□□□□ -1.279e-9■■■■■ 103.4
SF3B1O75533 RRM1-212ENST00000533349 2863 ntTSL 27.11□□□□□ -1.276e-6■■■■■ 103.4
SF3B1O75533 COG2-209ENST00000534989 2963 ntTSL 2 BASIC7.06□□□□□ -1.286e-6■■■■■ 103.4
SF3B1O75533 AC016831.1-203ENST00000418546 578 ntTSL 47.04□□□□□ -1.286e-6■■■■■ 103.4
Retrieved 100 of 46,956 protein–RNA pairs in 2395.6 ms