RNA–Protein interactions for RNA: ENST00000521932.1

VPS13B-210, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 1,055 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-210ENST00000521932 AEBP2Q6ZN18 517 aaPredicted RBP27.8■■■□□ 2.04
VPS13B-210ENST00000521932 CHIC1Q5VXU3 224 aa26.64■■□□□ 1.86
VPS13B-210ENST00000521932 SENP3Q9H4L4 574 aaPredicted RBP23.49■■□□□ 1.35
VPS13B-210ENST00000521932 PHF23Q9BUL5 403 aaPredicted RBP23.48■■□□□ 1.35
VPS13B-210ENST00000521932 FOXD1Q16676 465 aa21.96■■□□□ 1.11
VPS13B-210ENST00000521932 PLPPR3Q6T4P5 718 aa21.38■■□□□ 1.01
VPS13B-210ENST00000521932 PPP6R1Q9UPN7 881 aa20.86■□□□□ 0.93
VPS13B-210ENST00000521932 ADRA2BP18089 450 aa20.77■□□□□ 0.92
VPS13B-210ENST00000521932 PIAS4Q8N2W9 510 aaPredicted RBP20.54■□□□□ 0.88
VPS13B-210ENST00000521932 MSH5O43196 834 aa20.28■□□□□ 0.84
VPS13B-210ENST00000521932 NISCHQ9Y2I1 1504 aa19.85■□□□□ 0.77
VPS13B-210ENST00000521932 POTEDQ86YR6 584 aa19.71■□□□□ 0.75
VPS13B-210ENST00000521932 MAPK8IP2Q13387 824 aaPredicted RBP19■□□□□ 0.63
VPS13B-210ENST00000521932 PPP4R3CPQ6ZMV5 832 aa18.83■□□□□ 0.6
VPS13B-210ENST00000521932 SCAF1Q9H7N4 1312 aaKnown RBP18.81■□□□□ 0.6
VPS13B-210ENST00000521932 DMRT2Q9Y5R5 561 aa18.74■□□□□ 0.59
VPS13B-210ENST00000521932 CNKSR2Q8WXI2 1034 aa18.36■□□□□ 0.53
VPS13B-210ENST00000521932 HOXD11P31277 338 aaPredicted RBP18.19■□□□□ 0.5
VPS13B-210ENST00000521932 RNF216Q9NWF9 866 aaPredicted RBP18.11■□□□□ 0.49
VPS13B-210ENST00000521932 NCBP3Q53F19 620 aaKnown RBP18.1■□□□□ 0.49
VPS13B-210ENST00000521932 NPM3O75607 178 aaKnown RBP17.99■□□□□ 0.47
VPS13B-210ENST00000521932 KCNA4P22459 653 aa17.99■□□□□ 0.47
VPS13B-210ENST00000521932 DCAF8L1A6NGE4 600 aa17.88■□□□□ 0.45
VPS13B-210ENST00000521932 CCDC180Q9P1Z9 1646 aa17.5■□□□□ 0.39
VPS13B-210ENST00000521932 DNAJC5BQ9UF47 199 aa17.49■□□□□ 0.39
VPS13B-210ENST00000521932 RNF39Q9H2S5 420 aa17.43■□□□□ 0.38
VPS13B-210ENST00000521932 CACNB1Q02641 598 aaPredicted RBP17.28■□□□□ 0.36
VPS13B-210ENST00000521932 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.26■□□□□ 0.35
VPS13B-210ENST00000521932 SLC4A2P04920 1241 aa17.14■□□□□ 0.33
VPS13B-210ENST00000521932 C1QBPQ07021 282 aaKnown RBP17.11■□□□□ 0.33
VPS13B-210ENST00000521932 U3KPZ7 1027 aaPredicted RBP17.04■□□□□ 0.32
VPS13B-210ENST00000521932 SLC4A1APQ9BWU0 796 aaKnown RBP16.97■□□□□ 0.31
VPS13B-210ENST00000521932 ABCC9O60706 1549 aa16.93■□□□□ 0.3
VPS13B-210ENST00000521932 SPINK5Q9NQ38 1064 aaPredicted RBP16.71■□□□□ 0.27
VPS13B-210ENST00000521932 ZBTB22O15209 634 aa16.62■□□□□ 0.25
VPS13B-210ENST00000521932 FOXD4L1Q9NU39 408 aa16.59■□□□□ 0.25
VPS13B-210ENST00000521932 ZCCHC6Q5VYS8 1495 aaKnown RBP16.57■□□□□ 0.24
VPS13B-210ENST00000521932 CAPN15O75808 1086 aa16.55■□□□□ 0.24
VPS13B-210ENST00000521932 MYCNP04198 464 aaPredicted RBP16.55■□□□□ 0.24
VPS13B-210ENST00000521932 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.5■□□□□ 0.23
VPS13B-210ENST00000521932 HNRNPUL2Q1KMD3 747 aaKnown RBP16.5■□□□□ 0.23
VPS13B-210ENST00000521932 DCAF8L2P0C7V8 631 aa16.48■□□□□ 0.23
VPS13B-210ENST00000521932 SAMD1Q6SPF0 538 aaPredicted RBP16.47■□□□□ 0.23
VPS13B-210ENST00000521932 MYO15BQ96JP2 1530 aa16.46■□□□□ 0.23
VPS13B-210ENST00000521932 DCAF1Q9Y4B6 1507 aa16.46■□□□□ 0.23
VPS13B-210ENST00000521932 NACADO15069 1562 aa16.45■□□□□ 0.22
VPS13B-210ENST00000521932 DSG3P32926 999 aa16.44■□□□□ 0.22
VPS13B-210ENST00000521932 RB1CC1Q8TDY2 1594 aa16.39■□□□□ 0.21
VPS13B-210ENST00000521932 TRHP20396 242 aaPredicted RBP16.39■□□□□ 0.21
VPS13B-210ENST00000521932 APLP2Q06481 763 aa16.38■□□□□ 0.21
VPS13B-210ENST00000521932 ZNF219Q9P2Y4 722 aaPredicted RBP16.32■□□□□ 0.2
VPS13B-210ENST00000521932 ATF5Q9Y2D1 282 aaPredicted RBP16.29■□□□□ 0.2
VPS13B-210ENST00000521932 ABCB7O75027 752 aa16.27■□□□□ 0.2
VPS13B-210ENST00000521932 CSRNP3Q8WYN3 585 aa16.11■□□□□ 0.17
VPS13B-210ENST00000521932 POLA2Q14181 598 aa16.05■□□□□ 0.16
VPS13B-210ENST00000521932 EHMT2Q96KQ7 1210 aa16.05■□□□□ 0.16
VPS13B-210ENST00000521932 ATXN8OSP0DMR3 200 aa16.01■□□□□ 0.15
VPS13B-210ENST00000521932 UNC13AQ9UPW8 1703 aa15.98■□□□□ 0.15
VPS13B-210ENST00000521932 SCRIBQ14160 1630 aa15.96■□□□□ 0.15
VPS13B-210ENST00000521932 BICRAQ9NZM4 1560 aa15.9■□□□□ 0.14
VPS13B-210ENST00000521932 PABPN1Q86U42 306 aaKnown RBP eCLIP15.89■□□□□ 0.13
VPS13B-210ENST00000521932 SHROOM4Q9ULL8 1493 aa15.78■□□□□ 0.12
VPS13B-210ENST00000521932 ZBTB12Q9Y330 459 aaPredicted RBP15.64■□□□□ 0.09
VPS13B-210ENST00000521932 OSCARQ8IYS5 282 aa15.56■□□□□ 0.08
VPS13B-210ENST00000521932 MKRN4PQ13434 485 aaPredicted RBP15.55■□□□□ 0.08
VPS13B-210ENST00000521932 RBM42Q9BTD8 480 aaKnown RBP15.55■□□□□ 0.08
VPS13B-210ENST00000521932 EIF4G1Q04637 1599 aaKnown RBP15.45■□□□□ 0.06
VPS13B-210ENST00000521932 FBLN2P98095 1184 aa15.43■□□□□ 0.06
VPS13B-210ENST00000521932 CECR2Q9BXF3 1484 aa15.43■□□□□ 0.06
VPS13B-210ENST00000521932 POTEHQ6S545 545 aa15.41■□□□□ 0.06
VPS13B-210ENST00000521932 BAZ1AQ9NRL2 1556 aaPredicted RBP15.36■□□□□ 0.05
VPS13B-210ENST00000521932 CC2D2AQ9P2K1 1620 aa15.32■□□□□ 0.04
VPS13B-210ENST00000521932 AKT1S1Q96B36 256 aa15.32■□□□□ 0.04
VPS13B-210ENST00000521932 SMARCA4P51532 1647 aa15.32■□□□□ 0.04
VPS13B-210ENST00000521932 MROH2BQ7Z745 1585 aa15.28■□□□□ 0.04
VPS13B-210ENST00000521932 SPDYE2BA6NHP3 402 aa15.25■□□□□ 0.03
VPS13B-210ENST00000521932 SPDYE6P0CI01 402 aa15.25■□□□□ 0.03
VPS13B-210ENST00000521932 SPDYE2Q495Y8 402 aa15.25■□□□□ 0.03
VPS13B-210ENST00000521932 REM2Q8IYK8 340 aaPredicted RBP15.23■□□□□ 0.03
VPS13B-210ENST00000521932 ATAD2BQ9ULI0 1458 aa15.22■□□□□ 0.03
VPS13B-210ENST00000521932 RSF1Q96T23 1441 aaPredicted RBP15.22■□□□□ 0.03
VPS13B-210ENST00000521932 PEG3Q9GZU2 1588 aa15.21■□□□□ 0.03
VPS13B-210ENST00000521932 NCAPD3P42695 1498 aa15.2■□□□□ 0.02
VPS13B-210ENST00000521932 SMARCA2P51531 1590 aa15.19■□□□□ 0.02
VPS13B-210ENST00000521932 CHRDL2Q6WN34 429 aa15.16■□□□□ 0.02
VPS13B-210ENST00000521932 SSUH2Q9Y2M2 353 aa15.16■□□□□ 0.02
VPS13B-210ENST00000521932 ZNF692Q9BU19 519 aaPredicted RBP15.13■□□□□ 0.01
VPS13B-210ENST00000521932 HMGXB3Q12766 1538 aa15.11■□□□□ 0.01
VPS13B-210ENST00000521932 WIZO95785 1651 aa15.1■□□□□ 0.01
VPS13B-210ENST00000521932 PITPNM1O00562 1244 aa15.09■□□□□ 0.01
VPS13B-210ENST00000521932 BAZ1BQ9UIG0 1483 aaKnown RBP15.08■□□□□ 0.01
VPS13B-210ENST00000521932 TOP2AP11388 1531 aaKnown RBP14.97□□□□□ -0.01
VPS13B-210ENST00000521932 SUPT5HO00267 1087 aaKnown RBP14.96□□□□□ -0.01
VPS13B-210ENST00000521932 PIP4P2Q8N4L2 257 aa14.91□□□□□ -0.02
VPS13B-210ENST00000521932 SPDYE4A6NLX3 237 aa14.89□□□□□ -0.03
VPS13B-210ENST00000521932 SPDYE1Q8NFV5 336 aaPredicted RBP14.88□□□□□ -0.03
VPS13B-210ENST00000521932 FXR2P51116 673 aaKnown RBP eCLIP14.87□□□□□ -0.03
VPS13B-210ENST00000521932 CLEC11AQ9Y240 323 aa14.86□□□□□ -0.03
VPS13B-210ENST00000521932 CCDC88BA6NC98 1476 aa14.82□□□□□ -0.04
VPS13B-210ENST00000521932 CADPSQ9ULU8 1353 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms