Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.61■□□□□ 0.09
VPS4BO75351 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.61■□□□□ 0.09
VPS4BO75351 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 AC236430.1-201ENST00000402231 743 ntBASIC15.61■□□□□ 0.09
VPS4BO75351 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
VPS4BO75351 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.61■□□□□ 0.09
VPS4BO75351 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.61■□□□□ 0.09
VPS4BO75351 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.61■□□□□ 0.09
VPS4BO75351 FAM86C2P-203ENST00000528684 1004 ntBASIC15.61■□□□□ 0.09
VPS4BO75351 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.61■□□□□ 0.09
VPS4BO75351 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.61■□□□□ 0.09
VPS4BO75351 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.61■□□□□ 0.09
VPS4BO75351 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.61■□□□□ 0.09
VPS4BO75351 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.61■□□□□ 0.09
VPS4BO75351 AC009093.7-201ENST00000623853 1223 ntBASIC15.61■□□□□ 0.09
VPS4BO75351 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
VPS4BO75351 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.61■□□□□ 0.09
VPS4BO75351 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
VPS4BO75351 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.61■□□□□ 0.09
VPS4BO75351 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.6■□□□□ 0.09
VPS4BO75351 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
VPS4BO75351 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.6■□□□□ 0.09
VPS4BO75351 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.6■□□□□ 0.09
VPS4BO75351 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
VPS4BO75351 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 AL589702.1-201ENST00000641229 1509 ntBASIC15.6■□□□□ 0.09
VPS4BO75351 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.6■□□□□ 0.09
VPS4BO75351 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
VPS4BO75351 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 AC002056.1-201ENST00000395613 760 ntBASIC15.6■□□□□ 0.09
VPS4BO75351 AL627223.1-201ENST00000416693 442 ntBASIC15.6■□□□□ 0.09
VPS4BO75351 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 AC002472.2-201ENST00000442739 958 ntBASIC15.6■□□□□ 0.09
VPS4BO75351 TSPY16P-201ENST00000449843 468 ntBASIC15.6■□□□□ 0.09
VPS4BO75351 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.6■□□□□ 0.09
VPS4BO75351 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.6■□□□□ 0.09
VPS4BO75351 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.6■□□□□ 0.09
VPS4BO75351 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.6■□□□□ 0.09
VPS4BO75351 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 AL390955.2-201ENST00000603032 514 ntBASIC15.6■□□□□ 0.09
VPS4BO75351 AC026120.1-201ENST00000611536 926 ntBASIC15.6■□□□□ 0.09
VPS4BO75351 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.6■□□□□ 0.09
VPS4BO75351 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
VPS4BO75351 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.6■□□□□ 0.09
VPS4BO75351 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
VPS4BO75351 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.6■□□□□ 0.09
VPS4BO75351 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.6■□□□□ 0.09
VPS4BO75351 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.6■□□□□ 0.09
VPS4BO75351 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.6■□□□□ 0.09
VPS4BO75351 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 AC023824.1-201ENST00000562945 2975 ntBASIC15.6■□□□□ 0.09
VPS4BO75351 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
VPS4BO75351 AC092850.2-201ENST00000623821 2697 ntBASIC15.6■□□□□ 0.09
VPS4BO75351 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VPS4BO75351 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms