Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
LMX1BO60663 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14□□□□□ -0.17
LMX1BO60663 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC13.99□□□□□ -0.17
LMX1BO60663 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC13.99□□□□□ -0.17
LMX1BO60663 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC13.99□□□□□ -0.17
LMX1BO60663 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
LMX1BO60663 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.99□□□□□ -0.17
LMX1BO60663 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
LMX1BO60663 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC13.99□□□□□ -0.17
LMX1BO60663 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
LMX1BO60663 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 AKAP8P1-201ENST00000434743 1349 ntBASIC13.99□□□□□ -0.17
LMX1BO60663 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC13.99□□□□□ -0.17
LMX1BO60663 KLK8-202ENST00000320838 456 ntTSL 5 BASIC13.99□□□□□ -0.17
LMX1BO60663 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 VMA21-202ENST00000370361 693 ntTSL 5 BASIC13.99□□□□□ -0.17
LMX1BO60663 EDF1-203ENST00000371649 790 ntTSL 2 BASIC13.99□□□□□ -0.17
LMX1BO60663 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
LMX1BO60663 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC13.99□□□□□ -0.17
LMX1BO60663 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC13.99□□□□□ -0.17
LMX1BO60663 KLF2P3-201ENST00000451977 1087 ntBASIC13.99□□□□□ -0.17
LMX1BO60663 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC13.99□□□□□ -0.17
LMX1BO60663 PRYP6-201ENST00000514804 343 ntBASIC13.99□□□□□ -0.17
LMX1BO60663 IGHV3-62-201ENST00000520057 340 ntBASIC13.99□□□□□ -0.17
LMX1BO60663 RBM7-207ENST00000544582 692 ntTSL 3 BASIC13.99□□□□□ -0.17
LMX1BO60663 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 AL512356.2-201ENST00000546955 174 ntBASIC13.99□□□□□ -0.17
LMX1BO60663 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
LMX1BO60663 RARRES2P8-201ENST00000566335 367 ntBASIC13.99□□□□□ -0.17
LMX1BO60663 NAA60-208ENST00000570819 833 ntTSL 2 BASIC13.99□□□□□ -0.17
LMX1BO60663 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC13.99□□□□□ -0.17
LMX1BO60663 MIR4321-201ENST00000592276 80 ntBASIC13.99□□□□□ -0.17
LMX1BO60663 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC13.99□□□□□ -0.17
LMX1BO60663 FHL2-212ENST00000607522 759 ntTSL 2 BASIC13.99□□□□□ -0.17
LMX1BO60663 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC13.99□□□□□ -0.17
LMX1BO60663 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 AL161645.1-201ENST00000622716 1255 ntBASIC13.99□□□□□ -0.17
LMX1BO60663 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC13.99□□□□□ -0.17
LMX1BO60663 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC13.99□□□□□ -0.17
LMX1BO60663 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 F11R-206ENST00000621309 4770 ntTSL 5 BASIC13.99□□□□□ -0.17
LMX1BO60663 AC009090.5-201ENST00000624886 2285 ntBASIC13.99□□□□□ -0.17
LMX1BO60663 LRRFIP1P1-201ENST00000498774 2246 ntBASIC13.99□□□□□ -0.17
LMX1BO60663 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
LMX1BO60663 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 AC018892.3-201ENST00000623986 2499 ntBASIC13.99□□□□□ -0.17
LMX1BO60663 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC13.99□□□□□ -0.17
LMX1BO60663 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
LMX1BO60663 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
LMX1BO60663 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LMX1BO60663 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
LMX1BO60663 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.98□□□□□ -0.17
LMX1BO60663 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.98□□□□□ -0.17
LMX1BO60663 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
LMX1BO60663 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
LMX1BO60663 GOLGA2P9-201ENST00000596977 1937 ntBASIC13.98□□□□□ -0.17
LMX1BO60663 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
LMX1BO60663 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
LMX1BO60663 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
LMX1BO60663 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC13.98□□□□□ -0.17
LMX1BO60663 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
LMX1BO60663 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 AC107890.1-201ENST00000422478 521 ntBASIC13.98□□□□□ -0.17
LMX1BO60663 RBPMS2P1-201ENST00000437762 623 ntBASIC13.98□□□□□ -0.17
LMX1BO60663 TSPY16P-201ENST00000449843 468 ntBASIC13.98□□□□□ -0.17
LMX1BO60663 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms