Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
MSH4O15457 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
MSH4O15457 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
MSH4O15457 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC17.71■□□□□ 0.42
MSH4O15457 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
MSH4O15457 CYP2AB1P-202ENST00000454440 1456 ntBASIC17.7■□□□□ 0.42
MSH4O15457 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
MSH4O15457 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
MSH4O15457 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.7■□□□□ 0.42
MSH4O15457 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
MSH4O15457 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.7■□□□□ 0.42
MSH4O15457 KRT18P43-201ENST00000469825 1281 ntBASIC17.7■□□□□ 0.42
MSH4O15457 ELK1P1-201ENST00000485699 580 ntBASIC17.7■□□□□ 0.42
MSH4O15457 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.7■□□□□ 0.42
MSH4O15457 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.7■□□□□ 0.42
MSH4O15457 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.7■□□□□ 0.42
MSH4O15457 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC17.7■□□□□ 0.42
MSH4O15457 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
MSH4O15457 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
MSH4O15457 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.7■□□□□ 0.42
MSH4O15457 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
MSH4O15457 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.7■□□□□ 0.42
MSH4O15457 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
MSH4O15457 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH4O15457 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
MSH4O15457 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH4O15457 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
MSH4O15457 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH4O15457 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH4O15457 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
MSH4O15457 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
MSH4O15457 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
MSH4O15457 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
MSH4O15457 RERG-209ENST00000546331 1383 ntTSL 2 BASIC17.69■□□□□ 0.42
MSH4O15457 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.69■□□□□ 0.42
MSH4O15457 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH4O15457 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
MSH4O15457 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
MSH4O15457 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH4O15457 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.69■□□□□ 0.42
MSH4O15457 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH4O15457 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.69■□□□□ 0.42
MSH4O15457 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.69■□□□□ 0.42
MSH4O15457 FAM86LP-201ENST00000478302 853 ntBASIC17.69■□□□□ 0.42
MSH4O15457 AC036164.1-201ENST00000570544 333 ntBASIC17.69■□□□□ 0.42
MSH4O15457 AC015910.1-201ENST00000579400 975 ntBASIC17.69■□□□□ 0.42
MSH4O15457 CTBP2P3-201ENST00000585629 1255 ntBASIC17.69■□□□□ 0.42
MSH4O15457 AC000095.1-201ENST00000603208 874 ntBASIC17.69■□□□□ 0.42
MSH4O15457 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.69■□□□□ 0.42
MSH4O15457 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.69■□□□□ 0.42
MSH4O15457 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH4O15457 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
MSH4O15457 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.69■□□□□ 0.42
MSH4O15457 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
MSH4O15457 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH4O15457 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
MSH4O15457 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
MSH4O15457 AC092850.2-201ENST00000623821 2697 ntBASIC17.69■□□□□ 0.42
MSH4O15457 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH4O15457 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH4O15457 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.69■□□□□ 0.42
MSH4O15457 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.69■□□□□ 0.42
MSH4O15457 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH4O15457 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSH4O15457 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSH4O15457 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH4O15457 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.68■□□□□ 0.42
MSH4O15457 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.68■□□□□ 0.42
MSH4O15457 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH4O15457 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSH4O15457 PAUPAR-201ENST00000630360 2965 ntBASIC17.68■□□□□ 0.42
MSH4O15457 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH4O15457 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.68■□□□□ 0.42
MSH4O15457 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.68■□□□□ 0.42
MSH4O15457 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.68■□□□□ 0.42
MSH4O15457 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
MSH4O15457 AL133267.1-201ENST00000398220 340 ntBASIC17.68■□□□□ 0.42
MSH4O15457 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSH4O15457 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
MSH4O15457 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.68■□□□□ 0.42
MSH4O15457 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH4O15457 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.68■□□□□ 0.42
MSH4O15457 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms