Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.48■□□□□ 0.07
HDAC3O15379 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.48■□□□□ 0.07
HDAC3O15379 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.48■□□□□ 0.07
HDAC3O15379 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
HDAC3O15379 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.48■□□□□ 0.07
HDAC3O15379 LINC00528-201ENST00000600723 2160 ntBASIC15.48■□□□□ 0.07
HDAC3O15379 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
HDAC3O15379 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.47■□□□□ 0.07
HDAC3O15379 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 AC023024.2-201ENST00000623561 1993 ntBASIC15.47■□□□□ 0.07
HDAC3O15379 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 LINC00552-201ENST00000625151 2579 ntBASIC15.47■□□□□ 0.07
HDAC3O15379 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
HDAC3O15379 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
HDAC3O15379 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.47■□□□□ 0.07
HDAC3O15379 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.47■□□□□ 0.07
HDAC3O15379 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.47■□□□□ 0.07
HDAC3O15379 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
HDAC3O15379 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.47■□□□□ 0.07
HDAC3O15379 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.47■□□□□ 0.07
HDAC3O15379 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.47■□□□□ 0.07
HDAC3O15379 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.47■□□□□ 0.07
HDAC3O15379 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
HDAC3O15379 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.47■□□□□ 0.07
HDAC3O15379 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.47■□□□□ 0.07
HDAC3O15379 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.47■□□□□ 0.07
HDAC3O15379 AC098831.1-202ENST00000438821 336 ntBASIC15.47■□□□□ 0.07
HDAC3O15379 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.47■□□□□ 0.07
HDAC3O15379 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.47■□□□□ 0.07
HDAC3O15379 AC098859.1-201ENST00000502915 1238 ntBASIC15.47■□□□□ 0.07
HDAC3O15379 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.47■□□□□ 0.07
HDAC3O15379 AC061975.2-201ENST00000581722 295 ntBASIC15.47■□□□□ 0.07
HDAC3O15379 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.47■□□□□ 0.07
HDAC3O15379 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
HDAC3O15379 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.47■□□□□ 0.07
HDAC3O15379 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 AC012313.10-201ENST00000623509 926 ntBASIC15.47■□□□□ 0.07
HDAC3O15379 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.47■□□□□ 0.07
HDAC3O15379 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.47■□□□□ 0.07
HDAC3O15379 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
HDAC3O15379 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
HDAC3O15379 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.47■□□□□ 0.07
HDAC3O15379 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HDAC3O15379 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
HDAC3O15379 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.46■□□□□ 0.07
HDAC3O15379 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.46■□□□□ 0.07
HDAC3O15379 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.46■□□□□ 0.07
HDAC3O15379 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
HDAC3O15379 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 AC004987.2-201ENST00000395959 1148 ntBASIC15.46■□□□□ 0.07
HDAC3O15379 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.46■□□□□ 0.07
HDAC3O15379 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.46■□□□□ 0.07
HDAC3O15379 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.46■□□□□ 0.07
HDAC3O15379 AL161645.1-201ENST00000622716 1255 ntBASIC15.46■□□□□ 0.07
HDAC3O15379 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.46■□□□□ 0.07
HDAC3O15379 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.46■□□□□ 0.07
HDAC3O15379 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.46■□□□□ 0.07
HDAC3O15379 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 AC007191.1-201ENST00000623179 2995 ntBASIC15.46■□□□□ 0.07
HDAC3O15379 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
HDAC3O15379 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.46■□□□□ 0.07
HDAC3O15379 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
HDAC3O15379 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.46■□□□□ 0.07
HDAC3O15379 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HDAC3O15379 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms