Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 SOD2-202ENST00000367054 815 ntTSL 2 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 AC026320.2-201ENST00000434379 478 ntBASIC12.03□□□□□ -0.48
COL6A5A8TX70 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 AC103810.10-201ENST00000606504 343 ntBASIC12.03□□□□□ -0.48
COL6A5A8TX70 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 AC015909.3-201ENST00000572855 1794 ntBASIC12.03□□□□□ -0.48
COL6A5A8TX70 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 AL391256.1-201ENST00000443260 1855 ntBASIC12.03□□□□□ -0.48
COL6A5A8TX70 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 FAM58BP-201ENST00000439056 645 ntBASIC12.03□□□□□ -0.48
COL6A5A8TX70 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 TP53-221ENST00000615910 1149 ntTSL 5 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 AC004554.1-201ENST00000422830 1468 ntBASIC12.02□□□□□ -0.48
COL6A5A8TX70 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC12.02□□□□□ -0.48
COL6A5A8TX70 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC12.02□□□□□ -0.48
COL6A5A8TX70 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
COL6A5A8TX70 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
COL6A5A8TX70 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.48
COL6A5A8TX70 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.48
COL6A5A8TX70 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC12.02□□□□□ -0.48
COL6A5A8TX70 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
COL6A5A8TX70 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
COL6A5A8TX70 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC12.02□□□□□ -0.49
COL6A5A8TX70 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC12.02□□□□□ -0.49
COL6A5A8TX70 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 NUDT4P2-201ENST00000578341 546 ntBASIC12.02□□□□□ -0.49
COL6A5A8TX70 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC12.02□□□□□ -0.49
COL6A5A8TX70 AC006548.2-201ENST00000605217 529 ntBASIC12.02□□□□□ -0.49
COL6A5A8TX70 AL162426.1-201ENST00000624141 743 ntBASIC12.02□□□□□ -0.49
COL6A5A8TX70 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC12.02□□□□□ -0.49
COL6A5A8TX70 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC12.02□□□□□ -0.49
COL6A5A8TX70 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC12.02□□□□□ -0.49
COL6A5A8TX70 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
COL6A5A8TX70 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC12.02□□□□□ -0.49
COL6A5A8TX70 AL627422.1-201ENST00000434104 580 ntBASIC12.02□□□□□ -0.49
COL6A5A8TX70 MIR4522-201ENST00000584932 87 ntBASIC12.02□□□□□ -0.49
COL6A5A8TX70 PEBP1P2-201ENST00000603980 558 ntBASIC12.02□□□□□ -0.49
COL6A5A8TX70 AL139339.2-201ENST00000608063 657 ntBASIC12.02□□□□□ -0.49
COL6A5A8TX70 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC12.02□□□□□ -0.49
COL6A5A8TX70 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.49
COL6A5A8TX70 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
COL6A5A8TX70 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 AC090164.3-201ENST00000610780 2143 ntBASIC12.02□□□□□ -0.49
COL6A5A8TX70 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 AC018892.3-201ENST00000623986 2499 ntBASIC12.02□□□□□ -0.49
COL6A5A8TX70 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC12.02□□□□□ -0.49
COL6A5A8TX70 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
COL6A5A8TX70 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
COL6A5A8TX70 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
COL6A5A8TX70 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms