Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 NME2-201ENST00000393183 568 ntTSL 2 BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 SLC4A1APP2-201ENST00000424054 1259 ntBASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 RPL28-209ENST00000560055 670 ntTSL 3 BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 FHL2-212ENST00000607522 759 ntTSL 2 BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 AC026748.1-201ENST00000624349 3251 ntBASIC11.1□□□□□ -0.63
UBE2D4Q9Y2X8 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 MROH4P-201ENST00000431302 1578 ntBASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 RPS2P28-201ENST00000314255 741 ntBASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 METTL26-205ENST00000397666 726 ntTSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 CENPM-204ENST00000402420 688 ntTSL 5 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 DDT-204ENST00000404092 805 ntTSL 3 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 AC092474.2-201ENST00000424288 719 ntBASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 RNF146-204ENST00000476956 884 ntTSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 SKP2-204ENST00000508514 821 ntTSL 3 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 KRT18P35-201ENST00000510488 1269 ntBASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 POLD4-207ENST00000531239 584 ntTSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 AC243562.2-201ENST00000561247 970 ntBASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 AC012640.2-201ENST00000561606 901 ntBASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 ARL16-209ENST00000573715 763 ntTSL 3 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 ARL16-211ENST00000576135 694 ntTSL 3 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 AC005089.1-201ENST00000619486 2241 ntBASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
UBE2D4Q9Y2X8 AC127383.1-201ENST00000444697 1800 ntBASIC11.09□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms