Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 SPCS2P4-201ENST00000436160 681 ntBASIC12.88□□□□□ -0.35
FOXA2Q9Y261 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 TSFM-210ENST00000550559 897 ntTSL 5 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 AC243562.2-201ENST00000561247 970 ntBASIC12.88□□□□□ -0.35
FOXA2Q9Y261 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 AC073389.1-201ENST00000595595 795 ntBASIC12.88□□□□□ -0.35
FOXA2Q9Y261 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 AC023824.1-201ENST00000562945 2975 ntBASIC12.88□□□□□ -0.35
FOXA2Q9Y261 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 AC090616.6-203ENST00000579186 1945 ntBASIC12.88□□□□□ -0.35
FOXA2Q9Y261 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 AC099063.4-201ENST00000641099 1602 ntBASIC12.88□□□□□ -0.35
FOXA2Q9Y261 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 CNN2P11-201ENST00000429351 262 ntBASIC12.87□□□□□ -0.35
FOXA2Q9Y261 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 AC098859.1-201ENST00000502915 1238 ntBASIC12.87□□□□□ -0.35
FOXA2Q9Y261 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 AC024267.1-201ENST00000582320 895 ntBASIC12.87□□□□□ -0.35
FOXA2Q9Y261 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA2Q9Y261 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms