Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 SLC9A7P1-201ENST00000554295 3311 ntBASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 TARDBPP1-201ENST00000442013 1203 ntBASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 AC010336.2-201ENST00000564226 506 ntBASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 AC100757.3-201ENST00000622361 1406 ntBASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMC4Q9NTJ3 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 RN7SL618P-201ENST00000477850 296 ntBASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 RFPL4AP1-201ENST00000530883 850 ntBASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
SMC4Q9NTJ3 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SMC4Q9NTJ3 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC20.33■□□□□ 0.84
SMC4Q9NTJ3 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMC4Q9NTJ3 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC20.33■□□□□ 0.84
SMC4Q9NTJ3 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC20.33■□□□□ 0.84
SMC4Q9NTJ3 AC105250.1-201ENST00000509378 2057 ntBASIC20.33■□□□□ 0.84
SMC4Q9NTJ3 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMC4Q9NTJ3 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMC4Q9NTJ3 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMC4Q9NTJ3 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMC4Q9NTJ3 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMC4Q9NTJ3 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 HNRNPA3P1-201ENST00000401429 1139 ntBASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 HNRNPA3P5-201ENST00000455201 833 ntBASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 LY6E-204ENST00000519546 971 ntTSL 2 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 MPI-209ENST00000564003 1195 ntTSL 2 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms