Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 MRPS18AP1-201ENST00000414458 589 ntBASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 PRR29-204ENST00000577953 565 ntTSL 4 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 AC092364.2-202ENST00000597012 1073 ntBASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 AC069224.1-201ENST00000566372 1715 ntBASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 REXO1L1P-202ENST00000608646 1974 ntBASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 BTBD7P1-201ENST00000447253 1453 ntBASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 AC126755.1-201ENST00000525846 6405 ntBASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 FAM8A3P-201ENST00000427218 844 ntBASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 TSPY16P-201ENST00000449843 468 ntBASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 UGT1A2P-201ENST00000454886 866 ntBASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 PHKG1P2-201ENST00000457537 863 ntBASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 SDHAP3-202ENST00000515467 728 ntBASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM39Q9HCM9 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 CDC14C-201ENST00000428251 1719 ntBASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms