Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 AC002347.1-201ENST00000569543 541 ntBASIC13.7□□□□□ -0.22
CMTM3Q96MX0 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 AC138894.3-201ENST00000603787 634 ntBASIC13.7□□□□□ -0.22
CMTM3Q96MX0 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 AC116407.4-201ENST00000623319 1061 ntBASIC13.7□□□□□ -0.22
CMTM3Q96MX0 AL645728.2-201ENST00000641974 660 ntBASIC13.7□□□□□ -0.22
CMTM3Q96MX0 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CMTM3Q96MX0 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 RPL5P21-201ENST00000404620 815 ntBASIC13.69□□□□□ -0.22
CMTM3Q96MX0 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 RIN3-211ENST00000557762 517 ntTSL 3 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 RMI2-205ENST00000576027 818 ntTSL 2 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 MTDHP3-201ENST00000594186 672 ntBASIC13.69□□□□□ -0.22
CMTM3Q96MX0 AC008667.4-201ENST00000607370 168 ntBASIC13.69□□□□□ -0.22
CMTM3Q96MX0 AC069148.1-201ENST00000608741 768 ntBASIC13.69□□□□□ -0.22
CMTM3Q96MX0 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 PAN3-AS1-201ENST00000563843 1351 ntBASIC13.69□□□□□ -0.22
CMTM3Q96MX0 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.69□□□□□ -0.22
CMTM3Q96MX0 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CMTM3Q96MX0 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CMTM3Q96MX0 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CMTM3Q96MX0 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CMTM3Q96MX0 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.68□□□□□ -0.22
CMTM3Q96MX0 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.68□□□□□ -0.22
CMTM3Q96MX0 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CMTM3Q96MX0 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CMTM3Q96MX0 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms