Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 UBE2Q2P6-202ENST00000617217 443 ntTSL 5 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 RN7SL832P-201ENST00000607781 1756 ntBASIC17.09■□□□□ 0.33
LRCH3Q96II8 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
LRCH3Q96II8 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LRCH3Q96II8 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.08■□□□□ 0.33
LRCH3Q96II8 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LRCH3Q96II8 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LRCH3Q96II8 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LRCH3Q96II8 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LRCH3Q96II8 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LRCH3Q96II8 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.08■□□□□ 0.33
LRCH3Q96II8 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LRCH3Q96II8 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC17.08■□□□□ 0.33
LRCH3Q96II8 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.08■□□□□ 0.32
LRCH3Q96II8 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.08■□□□□ 0.32
LRCH3Q96II8 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LRCH3Q96II8 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LRCH3Q96II8 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRCH3Q96II8 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
LRCH3Q96II8 AC007274.2-201ENST00000421675 662 ntBASIC17.08■□□□□ 0.32
LRCH3Q96II8 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.08■□□□□ 0.32
LRCH3Q96II8 MSRA-203ENST00000441698 788 ntTSL 2 BASIC17.08■□□□□ 0.32
LRCH3Q96II8 AC084866.2-201ENST00000509956 449 ntTSL 2 BASIC17.08■□□□□ 0.32
LRCH3Q96II8 NPM1P43-201ENST00000558669 786 ntBASIC17.08■□□□□ 0.32
LRCH3Q96II8 RN7SL774P-201ENST00000577467 290 ntBASIC17.08■□□□□ 0.32
LRCH3Q96II8 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC17.08■□□□□ 0.32
LRCH3Q96II8 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
LRCH3Q96II8 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRCH3Q96II8 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRCH3Q96II8 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.32
LRCH3Q96II8 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRCH3Q96II8 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRCH3Q96II8 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
LRCH3Q96II8 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.07■□□□□ 0.32
LRCH3Q96II8 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC17.07■□□□□ 0.32
LRCH3Q96II8 ATP6V1G1-201ENST00000374050 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC17.07■□□□□ 0.32
LRCH3Q96II8 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.07■□□□□ 0.32
LRCH3Q96II8 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
LRCH3Q96II8 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
LRCH3Q96II8 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
LRCH3Q96II8 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC17.07■□□□□ 0.32
LRCH3Q96II8 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.07■□□□□ 0.32
LRCH3Q96II8 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.07■□□□□ 0.32
LRCH3Q96II8 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.07■□□□□ 0.32
LRCH3Q96II8 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.07■□□□□ 0.32
LRCH3Q96II8 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
LRCH3Q96II8 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC17.07■□□□□ 0.32
LRCH3Q96II8 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 AL118508.1-201ENST00000613502 2345 ntBASIC17.07■□□□□ 0.32
LRCH3Q96II8 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LRCH3Q96II8 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRCH3Q96II8 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
LRCH3Q96II8 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRCH3Q96II8 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRCH3Q96II8 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LRCH3Q96II8 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRCH3Q96II8 AC008132.1-202ENST00000342005 1389 ntBASIC17.06■□□□□ 0.32
LRCH3Q96II8 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LRCH3Q96II8 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.06■□□□□ 0.32
LRCH3Q96II8 AC018695.7-201ENST00000624587 2492 ntBASIC17.06■□□□□ 0.32
LRCH3Q96II8 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC17.06■□□□□ 0.32
LRCH3Q96II8 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms