Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
VPS52Q8N1B4 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS52Q8N1B4 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS52Q8N1B4 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS52Q8N1B4 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
VPS52Q8N1B4 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VPS52Q8N1B4 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS52Q8N1B4 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS52Q8N1B4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.25■□□□□ 0.35
VPS52Q8N1B4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 PCGF3-213ENST00000620529 1899 ntBASIC17.25■□□□□ 0.35
VPS52Q8N1B4 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 AL513477.1-201ENST00000602865 2407 ntBASIC17.25■□□□□ 0.35
VPS52Q8N1B4 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 ACA64.2-201ENST00000459014 129 ntBASIC17.25■□□□□ 0.35
VPS52Q8N1B4 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 AC123567.1-201ENST00000548294 1261 ntBASIC17.25■□□□□ 0.35
VPS52Q8N1B4 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
VPS52Q8N1B4 AL662844.4-201ENST00000606367 2838 ntBASIC17.25■□□□□ 0.35
VPS52Q8N1B4 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 AC079776.1-201ENST00000401540 1152 ntBASIC17.24■□□□□ 0.35
VPS52Q8N1B4 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 RN7SL837P-201ENST00000463010 287 ntBASIC17.24■□□□□ 0.35
VPS52Q8N1B4 ELK1P1-201ENST00000485699 580 ntBASIC17.24■□□□□ 0.35
VPS52Q8N1B4 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 KRT17P8-201ENST00000540749 863 ntBASIC17.24■□□□□ 0.35
VPS52Q8N1B4 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 CTBP2P3-201ENST00000585629 1255 ntBASIC17.24■□□□□ 0.35
VPS52Q8N1B4 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 AC099568.2-201ENST00000609194 695 ntBASIC17.24■□□□□ 0.35
VPS52Q8N1B4 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS52Q8N1B4 AC026691.1-201ENST00000602502 2017 ntBASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms