Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 NUP210P1-202ENST00000504322 710 ntBASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 NKG7-204ENST00000595217 816 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 MPV17-204ENST00000399052 749 ntTSL 4 BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC88AQ3V6T2 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC19.08■□□□□ 0.64
CCDC88AQ3V6T2 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC88AQ3V6T2 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC88AQ3V6T2 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC19.08■□□□□ 0.64
CCDC88AQ3V6T2 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC88AQ3V6T2 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC19.08■□□□□ 0.64
CCDC88AQ3V6T2 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.08■□□□□ 0.64
CCDC88AQ3V6T2 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC88AQ3V6T2 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC88AQ3V6T2 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC19.08■□□□□ 0.64
CCDC88AQ3V6T2 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.08■□□□□ 0.64
CCDC88AQ3V6T2 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC88AQ3V6T2 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 AL354877.1-201ENST00000424412 413 ntBASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 EHF-205ENST00000527935 557 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 AC097359.3-201ENST00000603982 1210 ntBASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 AL023775.1-201ENST00000454907 1746 ntBASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 AC008132.1-202ENST00000342005 1389 ntBASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC88AQ3V6T2 AC092364.2-201ENST00000596710 2692 ntBASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CCDC88AQ3V6T2 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms