Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
HNF4AP41235 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HNF4AP41235 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HNF4AP41235 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HNF4AP41235 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HNF4AP41235 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.46■□□□□ 0.07
HNF4AP41235 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.46■□□□□ 0.07
HNF4AP41235 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HNF4AP41235 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
HNF4AP41235 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.46■□□□□ 0.07
HNF4AP41235 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HNF4AP41235 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HNF4AP41235 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.46■□□□□ 0.07
HNF4AP41235 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HNF4AP41235 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.46■□□□□ 0.07
HNF4AP41235 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
HNF4AP41235 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HNF4AP41235 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.46■□□□□ 0.07
HNF4AP41235 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HNF4AP41235 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
HNF4AP41235 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.46■□□□□ 0.07
HNF4AP41235 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.46■□□□□ 0.07
HNF4AP41235 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.46■□□□□ 0.07
HNF4AP41235 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.46■□□□□ 0.07
HNF4AP41235 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.46■□□□□ 0.07
HNF4AP41235 AC004449.1-201ENST00000564240 433 ntBASIC15.46■□□□□ 0.07
HNF4AP41235 AC026150.2-201ENST00000564693 1156 ntBASIC15.46■□□□□ 0.07
HNF4AP41235 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.46■□□□□ 0.07
HNF4AP41235 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HNF4AP41235 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.46■□□□□ 0.07
HNF4AP41235 LINC00628-201ENST00000628516 1289 ntBASIC15.46■□□□□ 0.07
HNF4AP41235 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.46■□□□□ 0.07
HNF4AP41235 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
HNF4AP41235 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.46■□□□□ 0.07
HNF4AP41235 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HNF4AP41235 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.46■□□□□ 0.07
HNF4AP41235 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HNF4AP41235 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
HNF4AP41235 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
HNF4AP41235 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.46■□□□□ 0.06
HNF4AP41235 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.06
HNF4AP41235 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.46■□□□□ 0.06
HNF4AP41235 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
HNF4AP41235 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
HNF4AP41235 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
HNF4AP41235 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.45■□□□□ 0.06
HNF4AP41235 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.45■□□□□ 0.06
HNF4AP41235 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.45■□□□□ 0.06
HNF4AP41235 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
HNF4AP41235 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.45■□□□□ 0.06
HNF4AP41235 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
HNF4AP41235 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
HNF4AP41235 TSEN15P1-201ENST00000423257 515 ntBASIC15.45■□□□□ 0.06
HNF4AP41235 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.45■□□□□ 0.06
HNF4AP41235 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.45■□□□□ 0.06
HNF4AP41235 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 AC109322.1-201ENST00000524499 1264 ntBASIC15.45■□□□□ 0.06
HNF4AP41235 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.45■□□□□ 0.06
HNF4AP41235 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.45■□□□□ 0.06
HNF4AP41235 MIR6080-201ENST00000617359 66 ntBASIC15.45■□□□□ 0.06
HNF4AP41235 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.45■□□□□ 0.06
HNF4AP41235 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.45■□□□□ 0.06
HNF4AP41235 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.45■□□□□ 0.06
HNF4AP41235 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
HNF4AP41235 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.45■□□□□ 0.06
HNF4AP41235 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HNF4AP41235 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
HNF4AP41235 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
HNF4AP41235 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HNF4AP41235 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
HNF4AP41235 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HNF4AP41235 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
HNF4AP41235 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HNF4AP41235 AL136982.4-201ENST00000437689 1740 ntBASIC15.44■□□□□ 0.06
HNF4AP41235 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
HNF4AP41235 AL139400.1-201ENST00000366220 510 ntBASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms