Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 AC244107.1-201ENST00000442033 332 ntBASIC15.1■□□□□ 0.01
RORAP35398 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.1■□□□□ 0.01
RORAP35398 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.1■□□□□ 0.01
RORAP35398 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.1■□□□□ 0.01
RORAP35398 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.1■□□□□ 0.01
RORAP35398 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
RORAP35398 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.1■□□□□ 0.01
RORAP35398 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
RORAP35398 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 FLJ16779-201ENST00000612722 7638 ntBASIC15.1■□□□□ 0.01
RORAP35398 BNIP3P1-202ENST00000550043 1585 ntBASIC15.1■□□□□ 0.01
RORAP35398 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
RORAP35398 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
RORAP35398 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.1■□□□□ 0.01
RORAP35398 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.09■□□□□ 0.01
RORAP35398 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
RORAP35398 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
RORAP35398 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.09■□□□□ 0.01
RORAP35398 AP001282.1-201ENST00000531301 1499 ntBASIC15.09■□□□□ 0.01
RORAP35398 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
RORAP35398 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.09■□□□□ 0.01
RORAP35398 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
RORAP35398 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.09■□□□□ 0.01
RORAP35398 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
RORAP35398 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 AP006294.1-201ENST00000415407 339 ntBASIC15.09■□□□□ 0.01
RORAP35398 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.09■□□□□ 0.01
RORAP35398 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 KRT17P7-201ENST00000451704 1104 ntBASIC15.09■□□□□ 0.01
RORAP35398 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.09■□□□□ 0.01
RORAP35398 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.09■□□□□ 0.01
RORAP35398 TIMM17BP1-201ENST00000545713 516 ntBASIC15.09■□□□□ 0.01
RORAP35398 RRP7BP-205ENST00000566851 833 ntBASIC15.09■□□□□ 0.01
RORAP35398 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
RORAP35398 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 AL596087.1-201ENST00000400979 1969 ntBASIC15.09■□□□□ 0.01
RORAP35398 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.09■□□□□ 0.01
RORAP35398 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
RORAP35398 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
RORAP35398 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.09■□□□□ 0.01
RORAP35398 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RORAP35398 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
RORAP35398 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.08■□□□□ 0.01
RORAP35398 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
RORAP35398 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms