Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC14.95□□□□□ -0.02
COL5A1P20908 AL513523.2-202ENST00000427283 2040 ntBASIC14.95□□□□□ -0.02
COL5A1P20908 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
COL5A1P20908 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC14.94□□□□□ -0.02
COL5A1P20908 AL662890.1-201ENST00000396818 632 ntBASIC14.94□□□□□ -0.02
COL5A1P20908 FXNP2-201ENST00000411625 547 ntBASIC14.94□□□□□ -0.02
COL5A1P20908 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC14.94□□□□□ -0.02
COL5A1P20908 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC14.94□□□□□ -0.02
COL5A1P20908 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC14.94□□□□□ -0.02
COL5A1P20908 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.94□□□□□ -0.02
COL5A1P20908 DIO1-215ENST00000610607 796 ntTSL 5 BASIC14.94□□□□□ -0.02
COL5A1P20908 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 AC138649.2-201ENST00000615886 705 ntBASIC14.94□□□□□ -0.02
COL5A1P20908 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.94□□□□□ -0.02
COL5A1P20908 AC138627.1-207ENST00000641560 1006 ntBASIC14.94□□□□□ -0.02
COL5A1P20908 AL645728.2-202ENST00000641679 227 ntBASIC14.94□□□□□ -0.02
COL5A1P20908 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.94□□□□□ -0.02
COL5A1P20908 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.94□□□□□ -0.02
COL5A1P20908 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.94□□□□□ -0.02
COL5A1P20908 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.94□□□□□ -0.02
COL5A1P20908 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.94□□□□□ -0.02
COL5A1P20908 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.94□□□□□ -0.02
COL5A1P20908 AL023775.1-201ENST00000454907 1746 ntBASIC14.94□□□□□ -0.02
COL5A1P20908 AC069224.1-201ENST00000566372 1715 ntBASIC14.94□□□□□ -0.02
COL5A1P20908 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC14.94□□□□□ -0.02
COL5A1P20908 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
COL5A1P20908 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.94□□□□□ -0.02
COL5A1P20908 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC14.94□□□□□ -0.02
COL5A1P20908 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC14.94□□□□□ -0.02
COL5A1P20908 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.94□□□□□ -0.02
COL5A1P20908 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC14.94□□□□□ -0.02
COL5A1P20908 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
COL5A1P20908 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.94□□□□□ -0.02
COL5A1P20908 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.94□□□□□ -0.02
COL5A1P20908 AC097724.1-201ENST00000609581 426 ntBASIC14.94□□□□□ -0.02
COL5A1P20908 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.94□□□□□ -0.02
COL5A1P20908 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.94□□□□□ -0.02
COL5A1P20908 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL5A1P20908 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.94□□□□□ -0.02
COL5A1P20908 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL5A1P20908 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL5A1P20908 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL5A1P20908 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL5A1P20908 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.93□□□□□ -0.02
COL5A1P20908 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL5A1P20908 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL5A1P20908 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL5A1P20908 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
COL5A1P20908 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL5A1P20908 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL5A1P20908 TISP43-201ENST00000409793 538 ntTSL 4 BASIC14.93□□□□□ -0.02
COL5A1P20908 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.93□□□□□ -0.02
COL5A1P20908 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC14.93□□□□□ -0.02
COL5A1P20908 EIF4HP1-201ENST00000453115 687 ntBASIC14.93□□□□□ -0.02
COL5A1P20908 SERPINA13P-202ENST00000478994 924 ntBASIC14.93□□□□□ -0.02
COL5A1P20908 SDHD-202ENST00000525291 790 ntTSL 3 BASIC14.93□□□□□ -0.02
COL5A1P20908 AP003171.2-201ENST00000528208 925 ntBASIC14.93□□□□□ -0.02
COL5A1P20908 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC14.93□□□□□ -0.02
COL5A1P20908 PRSS30P-206ENST00000641773 873 ntBASIC14.93□□□□□ -0.02
COL5A1P20908 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.93□□□□□ -0.02
COL5A1P20908 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
COL5A1P20908 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL5A1P20908 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC14.93□□□□□ -0.02
COL5A1P20908 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
COL5A1P20908 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL5A1P20908 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
COL5A1P20908 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
COL5A1P20908 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC14.93□□□□□ -0.02
COL5A1P20908 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
COL5A1P20908 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL5A1P20908 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
COL5A1P20908 AC124067.4-201ENST00000519691 2379 ntBASIC14.92□□□□□ -0.02
COL5A1P20908 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
COL5A1P20908 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
COL5A1P20908 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.92□□□□□ -0.02
COL5A1P20908 NDUFAB1P1-201ENST00000404262 460 ntBASIC14.92□□□□□ -0.02
COL5A1P20908 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.92□□□□□ -0.02
COL5A1P20908 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC14.92□□□□□ -0.02
COL5A1P20908 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms