Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.68■□□□□ 0.42
COL11A1P12107 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
COL11A1P12107 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC17.68■□□□□ 0.42
COL11A1P12107 HOMER2P2-201ENST00000451621 847 ntBASIC17.68■□□□□ 0.42
COL11A1P12107 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC17.68■□□□□ 0.42
COL11A1P12107 AP006547.1-201ENST00000563435 692 ntBASIC17.68■□□□□ 0.42
COL11A1P12107 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC17.68■□□□□ 0.42
COL11A1P12107 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC17.68■□□□□ 0.42
COL11A1P12107 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.68■□□□□ 0.42
COL11A1P12107 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.68■□□□□ 0.42
COL11A1P12107 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC17.68■□□□□ 0.42
COL11A1P12107 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.67■□□□□ 0.42
COL11A1P12107 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
COL11A1P12107 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.67■□□□□ 0.42
COL11A1P12107 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
COL11A1P12107 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.67■□□□□ 0.42
COL11A1P12107 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.67■□□□□ 0.42
COL11A1P12107 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC17.67■□□□□ 0.42
COL11A1P12107 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 TISP43-201ENST00000409793 538 ntTSL 4 BASIC17.67■□□□□ 0.42
COL11A1P12107 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17.67■□□□□ 0.42
COL11A1P12107 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC17.67■□□□□ 0.42
COL11A1P12107 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC17.67■□□□□ 0.42
COL11A1P12107 MIR4741-201ENST00000579822 90 ntBASIC17.67■□□□□ 0.42
COL11A1P12107 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC17.67■□□□□ 0.42
COL11A1P12107 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC17.67■□□□□ 0.42
COL11A1P12107 PRSS30P-206ENST00000641773 873 ntBASIC17.67■□□□□ 0.42
COL11A1P12107 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.67■□□□□ 0.42
COL11A1P12107 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.67■□□□□ 0.42
COL11A1P12107 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL11A1P12107 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL11A1P12107 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL11A1P12107 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL11A1P12107 GHSR-202ENST00000427970 912 ntBASIC17.66■□□□□ 0.42
COL11A1P12107 FAM8A4P-201ENST00000435433 1213 ntBASIC17.66■□□□□ 0.42
COL11A1P12107 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.66■□□□□ 0.42
COL11A1P12107 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC17.66■□□□□ 0.42
COL11A1P12107 AL096828.3-201ENST00000615354 462 ntBASIC17.66■□□□□ 0.42
COL11A1P12107 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.66■□□□□ 0.42
COL11A1P12107 AC010491.1-201ENST00000563101 2797 ntBASIC17.66■□□□□ 0.42
COL11A1P12107 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.66■□□□□ 0.42
COL11A1P12107 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 AC020916.1-201ENST00000587762 1774 ntBASIC17.66■□□□□ 0.42
COL11A1P12107 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
COL11A1P12107 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC17.66■□□□□ 0.42
COL11A1P12107 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.66■□□□□ 0.42
COL11A1P12107 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL11A1P12107 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL11A1P12107 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL11A1P12107 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL11A1P12107 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL11A1P12107 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
COL11A1P12107 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC17.65■□□□□ 0.42
COL11A1P12107 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC17.65■□□□□ 0.42
COL11A1P12107 IGHJ2P-201ENST00000454480 60 ntBASIC17.65■□□□□ 0.42
COL11A1P12107 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL11A1P12107 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL11A1P12107 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.65■□□□□ 0.42
COL11A1P12107 ACTG1P17-201ENST00000558391 1119 ntBASIC17.65■□□□□ 0.42
COL11A1P12107 MIR3615-201ENST00000581999 87 ntBASIC17.65■□□□□ 0.42
COL11A1P12107 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.65■□□□□ 0.42
COL11A1P12107 KC6-205ENST00000599934 556 ntTSL 4 BASIC17.65■□□□□ 0.42
COL11A1P12107 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms