Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
HMGB1P09429 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 AL513477.1-201ENST00000602865 2407 ntBASIC18.7■□□□□ 0.58
HMGB1P09429 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HMGB1P09429 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HMGB1P09429 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 RPL37AP1-201ENST00000412502 279 ntBASIC18.7■□□□□ 0.58
HMGB1P09429 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGB1P09429 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 KLF2P3-201ENST00000451977 1087 ntBASIC18.7■□□□□ 0.58
HMGB1P09429 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGB1P09429 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGB1P09429 AC067863.1-201ENST00000494933 530 ntBASIC18.7■□□□□ 0.58
HMGB1P09429 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.7■□□□□ 0.58
HMGB1P09429 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
HMGB1P09429 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.7■□□□□ 0.58
HMGB1P09429 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.7■□□□□ 0.58
HMGB1P09429 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
HMGB1P09429 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGB1P09429 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGB1P09429 AL033527.5-202ENST00000641632 1098 ntBASIC18.7■□□□□ 0.58
HMGB1P09429 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGB1P09429 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGB1P09429 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.69■□□□□ 0.58
HMGB1P09429 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.69■□□□□ 0.58
HMGB1P09429 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
HMGB1P09429 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HMGB1P09429 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGB1P09429 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.69■□□□□ 0.58
HMGB1P09429 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
HMGB1P09429 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 AC073347.1-201ENST00000421633 2643 ntBASIC18.69■□□□□ 0.58
HMGB1P09429 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGB1P09429 TARDBPP1-201ENST00000442013 1203 ntBASIC18.69■□□□□ 0.58
HMGB1P09429 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.69■□□□□ 0.58
HMGB1P09429 AC125807.1-201ENST00000483097 614 ntBASIC18.69■□□□□ 0.58
HMGB1P09429 AC051619.7-201ENST00000568314 623 ntBASIC18.69■□□□□ 0.58
HMGB1P09429 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGB1P09429 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.69■□□□□ 0.58
HMGB1P09429 AC139530.3-201ENST00000620344 690 ntBASIC18.69■□□□□ 0.58
HMGB1P09429 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.69■□□□□ 0.58
HMGB1P09429 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
HMGB1P09429 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB1P09429 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGB1P09429 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
HMGB1P09429 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.68■□□□□ 0.58
HMGB1P09429 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.68■□□□□ 0.58
HMGB1P09429 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
HMGB1P09429 Z97205.2-201ENST00000564697 1639 ntBASIC18.68■□□□□ 0.58
HMGB1P09429 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.68■□□□□ 0.58
HMGB1P09429 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.68■□□□□ 0.58
HMGB1P09429 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB1P09429 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.68■□□□□ 0.58
HMGB1P09429 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms