Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.36■□□□□ 0.05
HOXC4P09017 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC15.36■□□□□ 0.05
HOXC4P09017 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.36■□□□□ 0.05
HOXC4P09017 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.36■□□□□ 0.05
HOXC4P09017 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.36■□□□□ 0.05
HOXC4P09017 PTP4A1P2-201ENST00000546033 454 ntBASIC15.36■□□□□ 0.05
HOXC4P09017 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC15.36■□□□□ 0.05
HOXC4P09017 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.36■□□□□ 0.05
HOXC4P09017 CLUHP6-201ENST00000580789 941 ntBASIC15.36■□□□□ 0.05
HOXC4P09017 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.36■□□□□ 0.05
HOXC4P09017 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.36■□□□□ 0.05
HOXC4P09017 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC15.36■□□□□ 0.05
HOXC4P09017 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.36■□□□□ 0.05
HOXC4P09017 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.36■□□□□ 0.05
HOXC4P09017 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.36■□□□□ 0.05
HOXC4P09017 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
HOXC4P09017 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.36■□□□□ 0.05
HOXC4P09017 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC15.36■□□□□ 0.05
HOXC4P09017 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.36■□□□□ 0.05
HOXC4P09017 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.36■□□□□ 0.05
HOXC4P09017 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
HOXC4P09017 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.36■□□□□ 0.05
HOXC4P09017 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.36■□□□□ 0.05
HOXC4P09017 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.36■□□□□ 0.05
HOXC4P09017 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.36■□□□□ 0.05
HOXC4P09017 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
HOXC4P09017 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.36■□□□□ 0.05
HOXC4P09017 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
HOXC4P09017 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.35■□□□□ 0.05
HOXC4P09017 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.35■□□□□ 0.05
HOXC4P09017 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HOXC4P09017 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
HOXC4P09017 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.35■□□□□ 0.05
HOXC4P09017 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.35■□□□□ 0.05
HOXC4P09017 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HOXC4P09017 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.35■□□□□ 0.05
HOXC4P09017 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
HOXC4P09017 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC15.35■□□□□ 0.05
HOXC4P09017 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HOXC4P09017 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HOXC4P09017 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.35■□□□□ 0.05
HOXC4P09017 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
HOXC4P09017 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.35■□□□□ 0.05
HOXC4P09017 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HOXC4P09017 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HOXC4P09017 TMEM14DP-201ENST00000422205 345 ntBASIC15.35■□□□□ 0.05
HOXC4P09017 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.35■□□□□ 0.05
HOXC4P09017 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.35■□□□□ 0.05
HOXC4P09017 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HOXC4P09017 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.35■□□□□ 0.05
HOXC4P09017 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
HOXC4P09017 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.35■□□□□ 0.05
HOXC4P09017 TDH-203ENST00000531764 1110 ntBASIC15.35■□□□□ 0.05
HOXC4P09017 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HOXC4P09017 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.35■□□□□ 0.05
HOXC4P09017 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
HOXC4P09017 AC107373.2-201ENST00000607735 490 ntBASIC15.35■□□□□ 0.05
HOXC4P09017 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC15.35■□□□□ 0.05
HOXC4P09017 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.35■□□□□ 0.05
HOXC4P09017 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.35■□□□□ 0.05
HOXC4P09017 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.35■□□□□ 0.05
HOXC4P09017 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HOXC4P09017 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HOXC4P09017 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HOXC4P09017 AC018695.7-201ENST00000624587 2492 ntBASIC15.35■□□□□ 0.05
HOXC4P09017 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.35■□□□□ 0.05
HOXC4P09017 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
HOXC4P09017 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.35■□□□□ 0.05
HOXC4P09017 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC4P09017 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC4P09017 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC4P09017 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC4P09017 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.34■□□□□ 0.05
HOXC4P09017 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC4P09017 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
HOXC4P09017 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC4P09017 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC4P09017 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.34■□□□□ 0.05
HOXC4P09017 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC4P09017 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC4P09017 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.34■□□□□ 0.05
HOXC4P09017 AC005229.1-201ENST00000392885 409 ntBASIC15.34■□□□□ 0.05
HOXC4P09017 KRT43P-201ENST00000434019 910 ntBASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms